RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJEB27957" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJEB27957 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2573348 2573348 PRJEB27957_P_NODE_80703_length_191_cov_1.098592_g80593_i0 PRJEB27957 80703 191 1.098592 2.09831072 Nitrosophilus labii 2706014 Bacteria Bacteria 54.7 0.005   NTclustered gi|1897228471|dbj|AP022826.1| 2706014 g80593 i0 100 0.151832460732984 29 0 15 0 110 138 1397439 1397467 Nitrosophilus labii HRV44 DNA, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nitratiruptoraceae Nitrosophilus Nitrosophilus labii
4814654 4814654 PRJEB27957_P_NODE_2924_length_644_cov_1.968067_g2837_i0 PRJEB27957 2924 644 1.968067 12.67435148 Campylobacter 194 Bacteria Bacteria 54.7 0.018   NTclustered gi|2151054173|gb|CP086658.1| 195 g2837 i0 100 2.79192546583851 29 0 5 0 299 327 38408 38380 Campylobacter coli strain P4581 plasmid pCC001, complete sequence blastn 1798 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
6401560 6401560 PRJEB27957_P_NODE_88906_length_182_cov_1.954887_g88796_i0 PRJEB27957 88906 182 1.954887 3.55789434 Campylobacter canadensis 449520 Bacteria Bacteria 52.8 0.015   NTclustered gi|1845963639|gb|CP035946.1| 449520 g88796 i0 100 0.153846153846154 28 0 15 0 44 71 549840 549813 Campylobacter canadensis strain LMG 24001 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter canadensis
7675656 7675656 PRJEB27957_P_NODE_125287_length_162_cov_0.920354_g125177_i0 PRJEB27957 125287 162 0.920354 1.49097348 Aliarcobacter cryaerophilus 28198 Bacteria Bacteria 54.7 0.004   NTclustered gi|2581873871|gb|CP134842.1| 2933791 g125177 i0 100 0.537037037037037 29 0 18 0 122 150 1750831 1750859 Arcobacter cryaerophilus gv. pseudocryaerophilus strain LEO 65 chromosome, complete genome blastn 87 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
8950396 8950396 PRJEB27957_P_NODE_100648_length_171_cov_1.278689_g100538_i0 PRJEB27957 100648 171 1.278689 2.18655819 Arcobacteraceae bacterium 2808971 Bacteria Bacteria 52.8 0.014   NTclustered gi|2621701254|emb|OY759974.1| 2808971 g100538 i0 100 0.327485380116959 28 0 16 0 52 79 112319 112346 MAG: Arcobacteraceae bacterium isolate 2f960911-6b7a-430b-8fcb-36b605e4e712 genome assembly, chromosome: 1 blastn 56 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae   Arcobacteraceae bacterium
8950468 8950468 PRJEB27957_P_NODE_81568_length_190_cov_1.106383_g81458_i0 PRJEB27957 81568 190 1.106383 2.1021277 Aliarcobacter cryaerophilus 28198 Bacteria Bacteria 63.9 7.54e-6   NTclustered gi|1491731269|gb|CP032825.1| 1032071 g81458 i0 97.297 0.489473684210526 37 1 19 0 151 187 619644 619680 Aliarcobacter cryaerophilus D2610 chromosome, complete genome blastn 93 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
14051563 14051563 PRJEB27957_P_NODE_72492_length_200_cov_1.324503_g72382_i0 PRJEB27957 72492 200 1.324503 2.649006 Aliarcobacter butzleri 28197 Bacteria Bacteria 52.8 0.017   NTclustered gi|526271239|gb|CP006615.1| 1036172 g72382 i0 100 0.14 28 0 14 0 128 155 114763 114736 Arcobacter butzleri 7h1h, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
25212966 25212966 PRJEB27957_P_NODE_96660_length_175_cov_1.190476_g96550_i0 PRJEB27957 96660 175 1.190476 2.083333 Pseudomonadati 3379134 Bacteria Bacteria 52.8 0.015   NTclustered gi|1850313845|gb|CP054052.1| 1904463 g96550 i0 100 0.32 28 0 16 0 119 146 1938947 1938920 Poseidonibacter lekithochrous strain DSM 100870 chromosome, complete genome blastn 56 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter lekithochrous
28770054 28770054 PRJEB27957_P_NODE_12767_length_387_cov_1.843195_g12657_i0 PRJEB27957 12767 387 1.843195 7.13316465 Hydrogenimonas thermophila 223786 Bacteria Bacteria 42.7 0.0479   NR WP_092913072.1 223786 g12657 i0 35.6 0.457364341085271 59 29 38.8 2 53 202 37 95 WP_092913072.1 hypothetical protein [Hydrogenimonas thermophila] diamond 177 42.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Hydrogenimonadaceae Hydrogenimonas Hydrogenimonas thermophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;