RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB27957", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJEB27957 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1297625 1297625 PRJEB27957_P_NODE_111402_length_166_cov_1.333333_g111292_i0 PRJEB27957 111402 166 1.333333 2.21333278 Pseudodesulfovibrio nedwellii 2973072 Bacteria Bacteria 54.7 0.004   NTclustered gi|2342767992|dbj|AP026709.1| 2973072 g111292 i0 100 0.174698795180723 29 0 17 0 94 122 803285 803313 Pseudodesulfovibrio sp. SYK DNA, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio nedwellii
27847888 27847888 PRJEB27957_P_NODE_24_length_2586_cov_4.977138_g21_i0 PRJEB27957 24 2586 4.977138 128.70878868 Pseudomonadati 3379134 Bacteria Bacteria 671 3.7199999999999983e-224   NR HIP82064.1 65555 g21 i0 56.9 3.23085846867749 557 240 64.6 0 2584 914 438 994 HIP82064.1 reverse transcriptase-like protein [Desulfocapsa sulfexigens] diamond 8355 671 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfocapsa Desulfocapsa sulfexigens
29212333 29212333 PRJEB27957_P_NODE_39529_length_254_cov_1.268293_g39419_i0 PRJEB27957 39529 254 1.268293 3.22146422 Syntrophobacteraceae bacterium CG 2052185 Bacteria Bacteria 43.5 0.00587   NR PIU32342.1 1974095 g39419 i0 41.7 0.566929133858268 48 26 54.3 1 80 217 28 75 PIU32342.1 MAG: metal-dependent hydrolase, partial [Syntrophobacteraceae bacterium CG07_land_8_20_14_0_80_61_8] diamond 144 43.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae   Syntrophobacteraceae bacterium CG07_land_8_20_14_0_80_61_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;