RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB27957", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJEB27957 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30318081 30318081 PRJEB27957_P_NODE_33472_length_271_cov_1.171171_g33362_i0 PRJEB27957 33472 271 1.171171 3.17387341 Myxococcota bacterium 2818507 Bacteria Bacteria 43.5 0.0255   NR MEZ4316278.1 2818507 g33362 i0 44.3 0.675276752767528 61 32 67.5 2 3 185 227 285 MEZ4316278.1 hypothetical protein [Myxococcota bacterium] diamond 183 43.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30728238 30728238 PRJEB27957_P_NODE_48034_length_235_cov_1.677419_g47924_i0 PRJEB27957 48034 235 1.677419 3.94193465 Myxococcales bacterium 2026763 Bacteria Bacteria 44.7 0.00717   NR HIA04517.1 2026763 g47924 i0 39.6 0.676595744680851 53 32 67.7 0 59 217 131 183 HIA04517.1 outer membrane protein assembly factor BamA [Myxococcales bacterium] diamond 159 44.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31487100 31487100 PRJEB27957_P_NODE_26956_length_294_cov_2.424490_g26846_i0 PRJEB27957 26956 294 2.42449 7.1280006 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 44.3 0.0168   NR MBM4379077.1 2026735 g26846 i0 43.5 0.63265306122449 62 31 61.2 2 108 287 7 66 MBM4379077.1 methyltransferase domain-containing protein [Deltaproteobacteria bacterium] diamond 186 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;