RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB27957" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJEB27957 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23363 23363 PRJEB27957_P_NODE_102881_length_169_cov_1.300000_g102771_i0 PRJEB27957 102881 169 1.3 2.197 Methanotorris igneus 2189 Archaea Archaea 56.5 0.001   NTclustered gi|333750483|gb|CP002737.1| 880724 g102771 i0 92.308 0.230769230769231 39 3 23 0 76 114 176474 176512 Methanotorris igneus Kol 5, complete genome blastn 39 56.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanotorris Methanotorris igneus
20113308 20113308 PRJEB27957_P_NODE_101616_length_170_cov_1.396694_g101506_i0 PRJEB27957 101616 170 1.396694 2.3743798 Methanosarcina 2207 Archaea Archaea 56.5 0.001   NTclustered gi|1111741292|dbj|AP017646.1| 2210 g101506 i0 100 0.705882352941177 30 0 18 0 109 138 948648 948677 Methanosarcina thermophila DNA, complete genome, strain: MT-1 blastn 120 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;