RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB27957" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJEB27957 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3849600 3849600 PRJEB27957_P_NODE_62684_length_212_cov_1.595092_g62574_i0 PRJEB27957 62684 212 1.595092 3.38159504 Chlorogonium euchlorum 52028 Plants Plants 56.5 0.001   NTclustered gi|2324954098|gb|OP597709.1| 52028 g62574 i0 100 0.273584905660377 30 0 14 0 138 167 84014 84043 Chlorogonium euchlorum chloroplast, partial genome blastn 58 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Chlorogonium Chlorogonium euchlorum
20424106 20424106 PRJEB27957_P_NODE_33717_length_270_cov_1.411765_g33607_i0 PRJEB27957 33717 270 1.411765 3.8117655 Trebouxia sp. SL0000003 3350044 Plants Plants 54.7 0.007   NTclustered gi|2917929620|emb|OZ234908.1| 3350044 g33607 i0 94.444 0.274074074074074 36 1 13 1 198 232 3415750 3415715 Trebouxia sp. SL0000003 genome assembly, chromosome: 3 blastn 74 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
27854438 27854438 PRJEB27957_P_NODE_65045_length_209_cov_1.300000_g64935_i0 PRJEB27957 65045 209 1.3 2.717 Chlamydomonas reinhardtii 3055 Plants Plants 44.3 0.00665   NR XP_042921633.1 3055 g64935 i0 48.7 0.559808612440191 39 20 56 0 138 22 4 42 XP_042921633.1 uncharacterized protein CHLRE_09g413700v5 [Chlamydomonas reinhardtii] diamond 117 44.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
28738574 28738574 PRJEB27957_P_NODE_55947_length_222_cov_1.202312_g55837_i0 PRJEB27957 55947 222 1.202312 2.66913264 Symbiochloris irregularis 706552 Plants Plants 43.5 0.0132   NR KAK9811195.1 706552 g55837 i0 28.8 0.702702702702703 52 37 70.3 0 184 29 68 119 KAK9811195.1 hypothetical protein WJX73_009397 [Symbiochloris irregularis] diamond 156 43.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris irregularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;