RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB27957", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB27957 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15325586 15325586 PRJEB27957_P_NODE_50053_length_231_cov_2.527473_g49943_i0 PRJEB27957 50053 231 2.527473 5.83846263 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.021   NTclustered gi|698820852|ref|XM_009845153.1| 112090 g49943 i0 100 0.121212121212121 28 0 12 0 18 45 1735 1762 Aphanomyces astaci hypothetical protein mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
29212332 29212332 PRJEB27957_P_NODE_100649_length_171_cov_1.278689_g100539_i0 PRJEB27957 100649 171 1.278689 2.18655819 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 41.2 0.0496   NR DBA04522.1 4803 g100539 i0 33.3 0.842105263157895 48 31 84.2 1 157 14 413 459 DBA04522.1 TPA: hypothetical protein N0F65_011070 [Lagenidium giganteum] diamond 144 41.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
32151264 32151264 PRJEB27957_P_NODE_77718_length_194_cov_1.289655_g77608_i0 PRJEB27957 77718 194 1.289655 2.5019307 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 41.6 0.0494   NR KAH9158890.1 100861 g77608 i0 37.9 0.896907216494845 58 35 88.1 1 174 4 236 293 KAH9158890.1 hypothetical protein LEN26_002657 [Aphanomyces euteiches] diamond 174 41.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;