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contig_metadata

16 rows where bioproject = "PRJEB25789" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJEB25789 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23258 23258 PRJEB25789_S_NODE_4021_length_438_cov_4.665753_g3942_i0 PRJEB25789 4021 438 4.665753 20.43599814 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 77 4.43e-15   NR DBA03679.1 4803 g3942 i0 61.3 3.8972602739726 62 24 42.5 0 40 225 1 62 DBA03679.1 TPA: hypothetical protein N0F65_004096 [Lagenidium giganteum] diamond 1707 77 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
2573051 2573051 PRJEB25789_S_NODE_1703_length_636_cov_3.676732_g1625_i0 PRJEB25789 1703 636 3.676732 23.38401552 root 1 Root_unresolved Root_unresolved 328 2.4599999999999992e-107   NR KAF1774507.1 29920 g1625 i0 79.6 106.63679245283 206 42 97.2 0 3 620 322 527 KAF1774507.1 P-loop containing nucleoside triphosphate hydrolase [Phytophthora cactorum] diamond 67821 331 0.990936555891239 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
2573158 2573158 PRJEB25789_S_NODE_4163_length_432_cov_1.495822_g4084_i0 PRJEB25789 4163 432 1.495822 6.46195104 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 187 2.64e-53   NR RHZ16721.1 112090 g4084 i0 66.4 9.09027777777778 131 43 90.3 1 431 42 147 277 RHZ16721.1 hypothetical protein DYB31_004085 [Aphanomyces astaci] diamond 3927 187 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
5125523 5125523 PRJEB25789_S_NODE_14745_length_263_cov_1.215789_g14666_i0 PRJEB25789 14745 263 1.215789 3.19752507 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 244 3.69e-60   NTclustered gi|2794921736|ref|XM_067881102.1| 164328 g14666 i0 84.553 5.77186311787072 246 38 94 0 17 262 834 589 Phytophthora ramorum Succinate--CoA ligase [ADP-forming] subunit alpha (KRP23_10630), partial mRNA blastn 1518 244 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
5125530 5125530 PRJEB25789_S_NODE_15225_length_259_cov_3.166667_g15146_i0 PRJEB25789 15225 259 3.166667 8.20166753 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 128 9.65e-36   NR KAF0743747.1 100861 g15146 i0 70.2 6.78764478764479 84 25 97.3 0 3 254 2 85 KAF0743747.1 hypothetical protein Ae201684_001401 [Aphanomyces euteiches] diamond 1758 128 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
14051370 14051370 PRJEB25789_S_NODE_20212_length_239_cov_7.234940_g20133_i0 PRJEB25789 20212 239 7.23494 17.2915066 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 231 2.5699999999999997e-56   NTclustered gi|301098381|ref|XM_002898238.1| 403677 g20133 i0 86.047 85.9874476987448 215 30 90 0 20 234 79 293 Phytophthora infestans T30-4 actin-like protein (PITG_15117), mRNA blastn 20551 231 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
21700064 21700064 PRJEB25789_S_NODE_9178_length_315_cov_1.561983_g9099_i0 PRJEB25789 9178 315 1.561983 4.92024645 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.7700000000000003e-21   NR DBA03690.1 4803 g9099 i0 58 4.58095238095238 88 35 81.9 1 56 313 228 315 DBA03690.1 TPA: hypothetical protein N0F65_004107 [Lagenidium giganteum] diamond 1443 97.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
25212754 25212754 PRJEB25789_S_NODE_20760_length_218_cov_5.489655_g20681_i0 PRJEB25789 20760 218 5.489655 11.9674479 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 244 2.96e-60   NTclustered gi|164508134|emb|AM412176.1| 4785 g20681 i0 87.037 99.0871559633027 216 28 99 0 1 216 477 262 Phytophthora cinnamomi act2 gene for actin, strain Pr120 blastn 21601 244 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
29363710 29363710 PRJEB25789_S_NODE_11349_length_291_cov_1.587156_g11270_i0 PRJEB25789 11349 291 1.587156 4.61862396 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 118 4.88e-29   NR XP_024580396.1 4781 g11270 i0 55.3 17.4329896907216 94 42 96.9 0 283 2 24 117 XP_024580396.1 Actin-binding protein Coronin, contains WD40 repeats [Plasmopara halstedii] diamond 5073 119 0.991596638655462 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
29647358 29647358 PRJEB25789_S_NODE_15430_length_258_cov_1.664865_g15351_i0 PRJEB25789 15430 258 1.664865 4.2953517 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 132 8.76e-38   NR XP_067794467.1 4785 g15351 i0 73.8 7.83720930232558 84 22 97.7 0 253 2 19 102 XP_067794467.1 60S ribosomal protein L30 [Phytophthora cinnamomi] diamond 2022 132 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30033295 30033295 PRJEB25789_S_NODE_6691_length_355_cov_2.393617_g6612_i0 PRJEB25789 6691 355 2.393617 8.49734035 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 79 3.57e-16   NR KAL0592358.1 65357 g6612 i0 42.1 2.45915492957746 95 52 80.3 1 66 350 23 114 KAL0592358.1 hypothetical protein ABG067_000466 [Albugo candida] diamond 873 79 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32208104 32208104 PRJEB25789_S_NODE_5078_length_397_cov_1.901235_g4999_i0 PRJEB25789 5078 397 1.901235 7.54790295 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 155 8.679999999999999e-43   NR KAF0738261.1 100861 g4999 i0 65.1 7.6095717884131 126 43 95.2 1 384 7 252 376 KAF0738261.1 hypothetical protein Ae201684_005821 [Aphanomyces euteiches] diamond 3021 156 0.993589743589744 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
32277979 32277979 PRJEB25789_S_NODE_19859_length_241_cov_1.988095_g19780_i0 PRJEB25789 19859 241 1.988095 4.79130895 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 105 3.75e-27   NR OQR99210.1 1202772 g19780 i0 70.9 4.56846473029046 79 20 94.6 1 2 229 47 125 OQR99210.1 60S ribosomal protein L22 [Achlya hypogyna] diamond 1101 105 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
32625415 32625415 PRJEB25789_S_NODE_9900_length_306_cov_1.695279_g9821_i0 PRJEB25789 9900 306 1.695279 5.18755374 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 127 3.37e-36   NR XP_008616217.1 1156394 g9821 i0 75 0.666666666666667 68 17 66.7 0 238 35 10 77 XP_008616217.1 hypothetical protein SDRG_11941 [Saprolegnia diclina VS20] diamond 204 127 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
32720022 32720022 PRJEB25789_S_NODE_12580_length_280_cov_1.169082_g12501_i0 PRJEB25789 12580 280 1.169082 3.2734296 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 79.7 3.89e-16   NR OQS01523.1 1202772 g12501 i0 45.1 1.75714285714286 82 45 87.9 0 14 259 57 138 OQS01523.1 hypothetical protein ACHHYP_00702 [Achlya hypogyna] diamond 492 79.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
32776459 32776459 PRJEB25789_S_NODE_3300_length_477_cov_2.042079_g3221_i0 PRJEB25789 3300 477 2.042079 9.74071683 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 130 6.609999999999999e-32   NR XP_009521283.1 67593 g3221 i0 50.3 2.74213836477987 145 69 90.6 3 1 432 539 681 XP_009521283.1 heme peroxidase [Phytophthora sojae] diamond 1308 130 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;