RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB25789", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB25789 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10225994 10225994 PRJEB25789_S_NODE_20069_length_241_cov_0.916667_g19990_i0 PRJEB25789 20069 241 0.916667 2.20916747 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 72 1.78e-12   NR MBI4042758.1 2026735 g19990 i0 50.6 1.9792531120332 81 37 97.1 1 238 5 185 265 MBI4042758.1 NADH-quinone oxidoreductase subunit L [Deltaproteobacteria bacterium] diamond 477 72 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27381039 27381039 PRJEB25789_S_NODE_17343_length_249_cov_0.875000_g17264_i0 PRJEB25789 17343 249 0.875 2.17875 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47 7.5e-4   NR MBT6435406.1 2026735 g17264 i0 42.4 1.59036144578313 66 34 79.5 1 221 24 111 172 MBT6435406.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 396 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29395192 29395192 PRJEB25789_S_NODE_19189_length_243_cov_1.358824_g19110_i0 PRJEB25789 19189 243 1.358824 3.30194232 root 1 Root_unresolved Root_unresolved 55.5 1.18e-6   NR MDB5214948.1 2484252 g19110 i0 36.8 6.46913580246914 76 45 93.8 2 3 230 339 411 MDB5214948.1 amine oxidase [Myxococcaceae bacterium] diamond 1572 55.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;