RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB25789", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB25789 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2572969 2572969 PRJEB25789_S_NODE_12743_length_279_cov_0.883495_g12664_i0 PRJEB25789 12743 279 0.883495 2.46495105 Virgulinella fragilis 243198 SAR_Eukaryotes SAR_Eukaryotes 516 7.58e-142   NTclustered gi|387235418|gb|JN207214.1| 243198 g12664 i0 100 115 279 0 100 0 1 279 652 374 Virgulinella fragilis clone J522-61 16S ribosomal RNA gene, partial sequence; chloroplast blastn 32085 516 1 Eukaryota Sar   Foraminifera   Rotaliida   Virgulinella Virgulinella fragilis
26931832 26931832 PRJEB25789_S_NODE_11122_length_293_cov_1.513636_g11043_i0 PRJEB25789 11122 293 1.513636 4.43495348 root 1 Root_unresolved Root_unresolved 58.2 2.48e-7   NR ETO05943.1 46433 g11043 i0 56.8 0.890784982935154 44 19 45.1 0 3 134 137 180 ETO05943.1 hypothetical protein RFI_31452 [Reticulomyxa filosa] diamond 261 58.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;