RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB25789", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB25789 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28991457 28991457 PRJEB25789_S_NODE_18848_length_244_cov_1.350877_g18769_i0 PRJEB25789 18848 244 1.350877 3.29613988 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 141 1.12e-39   NR CEO96711.1 37360 g18769 i0 81.5 2.98770491803279 81 15 99.6 0 2 244 11 91 CEO96711.1 hypothetical protein PBRA_005315 [Plasmodiophora brassicae] diamond 729 141 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32902356 32902356 PRJEB25789_S_NODE_17780_length_247_cov_1.770115_g17701_i0 PRJEB25789 17780 247 1.770115 4.37218405 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 48.5 3.48e-4   NR CEO98802.1 37360 g17701 i0 48.2 2.30769230769231 83 31 88.7 4 4 222 301 381 CEO98802.1 hypothetical protein PBRA_006916 [Plasmodiophora brassicae] diamond 570 48.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;