RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB25789", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJEB25789 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10226001 10226001 PRJEB25789_S_NODE_20509_length_231_cov_2.360759_g20430_i0 PRJEB25789 20509 231 2.360759 5.45335329 Metazoa 33208 Mollusca Mollusca 99 8.159999999999999e-23   NR XP_059139104.1 109671 g20430 i0 60 6.81818181818182 75 30 97.4 0 5 229 189 263 XP_059139104.1 large ribosomal subunit protein uL10-like [Physella acuta] diamond 1575 100 0.99 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
21700039 21700039 PRJEB25789_S_NODE_7898_length_333_cov_1.480769_g7819_i0 PRJEB25789 7898 333 1.480769 4.93096077 Metazoa 33208 Mollusca Mollusca 182 2.1e-54   NR XP_033735994.1 6579 g7819 i0 79.1 37.6396396396396 110 23 99.1 0 332 3 33 142 XP_033735994.1 40S ribosomal protein SA-like [Pecten maximus] diamond 12534 183 0.994535519125683 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Pecten Pecten maximus
30626909 30626909 PRJEB25789_S_NODE_16633_length_251_cov_0.865169_g16554_i0 PRJEB25789 16633 251 0.865169 2.17157419 Metazoa 33208 Mollusca Mollusca 92.8 9.81e-20   NR CAG2252353.1 6550 g16554 i0 57.1 9.34661354581673 77 33 92 0 241 11 543 619 CAG2252353.1 ACOX1 [Mytilus edulis] diamond 2346 93.6 0.991452991452991 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;