RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB25789", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJEB25789 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27159331 27159331 PRJEB25789_S_NODE_17062_length_250_cov_0.864407_g16983_i0 PRJEB25789 17062 250 0.864407 2.1610175 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 112 6.89e-30   NR XP_004333102.1 1257118 g16983 i0 68.8 0.96 80 25 96 0 250 11 54 133 XP_004333102.1 ribosomal protein L32, putative [Acanthamoeba castellanii str. Neff] diamond 240 112 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27949201 27949201 PRJEB25789_S_NODE_14685_length_263_cov_2.231579_g14606_i0 PRJEB25789 14685 263 2.231579 5.86905277 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 104 3.93e-25   NR XP_004337280.1 1257118 g14606 i0 63.5 0.96958174904943 85 31 97 0 255 1 147 231 XP_004337280.1 40S ribosomal protein S3a, putative [Acanthamoeba castellanii str. Neff] diamond 255 104 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28991456 28991456 PRJEB25789_S_NODE_18328_length_246_cov_0.890173_g18249_i0 PRJEB25789 18328 246 0.890173 2.18982558 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 141 7.379999999999997e-42   NR XP_004352812.1 1257118 g18249 i0 83.8 5.91463414634146 80 13 97.6 0 240 1 1 80 XP_004352812.1 ribosomal L37ae protein family [Acanthamoeba castellanii str. Neff] diamond 1455 141 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32056237 32056237 PRJEB25789_S_NODE_7538_length_339_cov_1.274436_g7459_i0 PRJEB25789 7538 339 1.274436 4.32033804 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 107 1.5399999999999999e-24   NR XP_004333651.1 1257118 g7459 i0 55.1 2.69026548672566 107 45 92 2 336 25 320 426 XP_004333651.1 coronin3, putative [Acanthamoeba castellanii str. Neff] diamond 912 107 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;