RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB25583" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB25583 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7364115 7364115 PRJEB25583_P_NODE_3286_length_223_cov_3.510753_g3109_i0 PRJEB25583 3286 223 3.510753 7.82897919 Truepera 332248 Bacteria Bacteria 298 2.3e-76   NTclustered gi|2573973991|gb|CP133611.1| 332249 g3109 i0 92.718 658.004484304933 206 15 92 0 18 223 762248 762043 Truepera radiovictrix strain CIP 108686 chromosome, complete genome blastn 146735 298 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
7675242 7675242 PRJEB25583_P_NODE_1047_length_452_cov_1.824096_g871_i0 PRJEB25583 1047 452 1.824096 8.24491392 Deinococcus sp. AJ005 2652443 Bacteria Bacteria 776 0   NTclustered gi|1761809830|gb|CP044990.1| 2652443 g871 i0 98.63 219.502212389381 438 6 97 0 15 452 201732 201295 Deinococcus sp. AJ005 chromosome, complete genome blastn 99215 776 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. AJ005
16599784 16599784 PRJEB25583_P_NODE_1454_length_362_cov_2.587692_g1277_i0 PRJEB25583 1454 362 2.587692 9.36744504 Deinococcus sp. AJ005 2652443 Bacteria Bacteria 669 0   NTclustered gi|1761809830|gb|CP044990.1| 2652443 g1277 i0 100 289.110497237569 362 0 100 0 1 362 98082 97721 Deinococcus sp. AJ005 chromosome, complete genome blastn 104658 669 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. AJ005
21699710 21699710 PRJEB25583_P_NODE_5398_length_177_cov_2.057143_g5221_i0 PRJEB25583 5398 177 2.057143 3.64114311 Deinococcus sp. AB2017081 3093660 Bacteria Bacteria 243 8.27e-60   NTclustered gi|2636768990|gb|CP140098.1| 3093660 g5221 i0 99.259 145 135 0 76 1 22 155 58245 58111 Deinococcus sp. AB2017081 chromosome, complete genome blastn 25665 243 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. AB2017081

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;