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contig_metadata

9 rows where bioproject = "PRJEB25583" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB25583 · 9 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6401149 6401149 PRJEB25583_P_NODE_8306_length_151_cov_1.026316_g8129_i0 PRJEB25583 8306 151 1.026316 1.54973716 Panthera onca 9690 Chordata Chordata 154 3.28e-33   NTclustered gi|2614064246|ref|XM_060611915.1| 9690 g8129 i0 97.753 164.94701986755 89 2 59 0 63 151 9626 9714 PREDICTED: Panthera onca BTB domain containing 3 (BTBD3), transcript variant X1, mRNA blastn 24907 154 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Panthera Panthera onca
12776574 12776574 PRJEB25583_P_NODE_5351_length_178_cov_1.680851_g5174_i0 PRJEB25583 5351 178 1.680851 2.99191478 Mus musculus 10090 Chordata Chordata 279 6.35e-71   NTclustered gi|2904935163|gb|PQ738086.1| 10090 g5174 i0 94.972 70.7078651685393 179 8 100 1 1 178 633 811 Mus musculus lncRNA, complete sequence blastn 12586 279 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
16289147 16289147 PRJEB25583_P_NODE_5753_length_173_cov_1.139706_g5576_i0 PRJEB25583 5753 173 1.139706 1.97169138 Phasianidae 9005 Chordata Chordata 285 1.32e-72   NTclustered gi|2919603018|emb|OZ238772.1| 9079 g5576 i0 97.059 1.98265895953757 170 4 98 1 4 173 13270521 13270353 Alectoris rufa genome assembly, chromosome: 7 blastn 343 285 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
17874575 17874575 PRJEB25583_P_NODE_1995_length_297_cov_1.565385_g1818_i0 PRJEB25583 1995 297 1.565385 4.64919345 Sus scrofa 9823 Chordata Chordata 279 1.16e-70   NTclustered gi|225543075|emb|CU468696.15| 9823 g1818 i0 88.066 143.946127946128 243 19 79 5 64 297 8855 9096 Pig DNA sequence from clone CH242-204N7 on chromosome X, complete sequence blastn 42752 279 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
17874606 17874606 PRJEB25583_P_NODE_6115_length_168_cov_2.801527_g5938_i0 PRJEB25583 6115 168 2.801527 4.70656536 Mus musculus 10090 Chordata Chordata 89.8 1.08e-13   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g5938 i0 87.342 17.6071428571429 79 9 47 1 90 168 384 307 Mus musculus lncRNA390 lncRNA, complete sequence blastn 2958 89.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22663419 22663419 PRJEB25583_P_NODE_7298_length_158_cov_0.925620_g7121_i0 PRJEB25583 7298 158 0.92562 1.4624796 Opisthokonta 33154 Chordata Chordata 292 7.07e-75   NTclustered gi|74203961|dbj|AK149617.1| 10090 g7121 i0 100 2 158 0 100 0 1 158 1408 1565 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530002K15 product:unclassifiable, full insert sequence blastn 316 292 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22974980 22974980 PRJEB25583_P_NODE_7219_length_158_cov_1.760331_g7042_i0 PRJEB25583 7219 158 1.760331 2.78132298 Sus scrofa 9823 Chordata Chordata 87.9 3.58e-13   NTclustered gi|299507935|emb|CU928840.6| 9823 g7042 i0 85.542 1.36708860759494 83 12 53 0 59 141 10831 10749 Pig DNA sequence from clone CH242-486G13 on chromosome X, complete sequence blastn 216 87.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
24248821 24248821 PRJEB25583_P_NODE_4760_length_188_cov_1.390728_g4583_i0 PRJEB25583 4760 188 1.390728 2.61456864 Sus scrofa 9823 Chordata Chordata 126 9.36e-25   NTclustered gi|294988734|gb|GU983681.1| 9823 g4583 i0 80.814 1.82978723404255 172 23 90 3 1 169 1646 1810 Sus scrofa mucin 4 transcript variant 4 (MUC4) gene, complete cds, alternatively spliced blastn 344 126 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
25212553 25212553 PRJEB25583_P_NODE_5740_length_173_cov_1.411765_g5563_i0 PRJEB25583 5740 173 1.411765 2.44235345 root 1 Root_unresolved Root_unresolved 56.5 0.001   NTclustered gi|2911451938|emb|OZ223580.1| 8472 g5563 i0 100 129.277456647399 30 0 17 0 101 130 23254435 23254464 Lepidochelys kempii isolate rLepKem1 genome assembly, chromosome: 22 blastn 22365 56.5 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;