RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB25583", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJEB25583 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27563591 27563591 PRJEB25583_P_NODE_3364_length_220_cov_4.480874_g3187_i0 PRJEB25583 3364 220 4.480874 9.8579228 PVC group 1783257 Bacteria Bacteria 60.5 1.1e-8   NR MFA5375934.1 2026734 g3187 i0 64.1 1.77272727272727 39 14 53.2 0 12 128 10 48 MFA5375934.1 hypothetical protein [Dehalococcoidia bacterium] diamond 390 60.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30665089 30665089 PRJEB25583_P_NODE_293_length_1143_cov_5.619349_g173_i0 PRJEB25583 293 1143 5.619349 64.22915907 Ktedonobacteraceae bacterium 2740538 Bacteria Bacteria 191 6.08e-52   NR HEX3641079.1 2740538 g173 i0 47.2 0.522309711286089 199 103 52.2 1 1 597 325 521 HEX3641079.1 reverse transcriptase domain-containing protein [Ktedonobacteraceae bacterium] diamond 597 191 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales Ktedonobacteraceae   Ktedonobacteraceae bacterium
31233659 31233659 PRJEB25583_P_NODE_7315_length_157_cov_3.600000_g7138_i0 PRJEB25583 7315 157 3.6 5.652 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 43.5 0.00616   NR MCH2508467.1 2026734 g7138 i0 40.9 0.840764331210191 44 26 84.1 0 132 1 212 255 MCH2508467.1 hypothetical protein [Dehalococcoidia bacterium] diamond 132 43.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;