RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB25583", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB25583 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5125372 5125372 PRJEB25583_P_NODE_2045_length_292_cov_3.450980_g1868_i0 PRJEB25583 2045 292 3.45098 10.0768616 Acidobacteriota bacterium 1978231 Bacteria Bacteria 348 3.0800000000000004e-91   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g1868 i0 90.805 93.8424657534247 261 23 89 1 14 273 317512 317252 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 27402 348 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
22974976 22974976 PRJEB25583_P_NODE_6039_length_169_cov_2.318182_g5862_i0 PRJEB25583 6039 169 2.318182 3.91772758 Acidobacteriota bacterium 1978231 Bacteria Bacteria 296 5.9e-76   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g5862 i0 98.225 100.91124260355 169 3 100 0 1 169 317937 318105 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 17054 296 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27191091 27191091 PRJEB25583_P_NODE_3462_length_217_cov_2.916667_g3285_i0 PRJEB25583 3462 217 2.916667 6.32916739 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 111 7.78e-29   NR HVA97207.1 2952895 g3285 i0 79.2 0.995391705069124 72 15 99.5 0 217 2 27 98 HVA97207.1 prohibitin family protein [Candidatus Acidiferrales bacterium] diamond 216 111 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
29464351 29464351 PRJEB25583_P_NODE_6950_length_160_cov_2.227642_g6773_i0 PRJEB25583 6950 160 2.227642 3.5642272 Acidobacteriota bacterium 1978231 Bacteria Bacteria 41.2 0.0428   NR MDE3064752.1 1978231 g6773 i0 32 0.9375 50 34 93.8 0 10 159 196 245 MDE3064752.1 hypothetical protein [Acidobacteriota bacterium] diamond 150 41.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;