RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB25583", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB25583 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
986416 986416 PRJEB25583_P_NODE_3941_length_204_cov_2.077844_g3764_i0 PRJEB25583 3941 204 2.077844 4.23880176 Bacteria 2 Bacteria Bacteria 62.1 2.96e-5   NTclustered gi|2592017114|gb|CP117894.1| 29519 g3764 i0 100 0.504901960784314 33 0 16 0 5 37 868464 868496 Borreliella garinii strain 17-54Z3 chromosome blastn 103 62.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella garinii
28927966 28927966 PRJEB25583_P_NODE_2528_length_257_cov_1.931818_g2351_i0 PRJEB25583 2528 257 1.931818 4.96477226 Leptospiraceae bacterium 2026757 Bacteria Bacteria 59.3 6.57e-8   NR MBP9889803.1 2026757 g2351 i0 41.2 0.992217898832685 85 49 98.1 1 2 253 1145 1229 MBP9889803.1 hypothetical protein [Leptospiraceae bacterium] diamond 255 59.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;