RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB25583", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB25583 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22663385 22663385 PRJEB25583_P_NODE_4938_length_185_cov_1.040541_g4761_i0 PRJEB25583 4938 185 1.040541 1.92500085 Stigmatella 40 Bacteria Bacteria 128 2.55e-25   NTclustered gi|507148216|ref|NR_103023.1| 41 g4761 i0 83.221 87.0108108108108 149 16 79 7 33 178 647 789 Stigmatella aurantiaca strain DW4/3-1 23S ribosomal RNA gene, complete sequence blastn 16097 128 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
28549318 28549318 PRJEB25583_P_NODE_7947_length_153_cov_1.344828_g7770_i0 PRJEB25583 7947 153 1.344828 2.05758684 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.8 9.23e-4   NR MCE5265667.1 2026735 g7770 i0 47.6 0.823529411764706 42 22 82.4 0 28 153 5 46 MCE5265667.1 phage tail protein [Deltaproteobacteria bacterium] diamond 126 45.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;