RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJEB25583", tax_clade = "core chlorophytes" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 6 ✖

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJEB25583 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5125389 5125389 PRJEB25583_P_NODE_3765_length_209_cov_1.127907_g3588_i0 PRJEB25583 3765 209 1.127907 2.35732563 Coccomyxa viridis 1274662 Plants Plants 103 4.57e-25   NR CAK0735959.1 1274662 g3588 i0 76.7 0.861244019138756 60 14 86.1 0 29 208 4 63 CAK0735959.1 Chlorophyll a-b binding protein of LHCII type I, chloroplastic [Coccomyxa viridis] diamond 180 103 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
8950005 8950005 PRJEB25583_P_NODE_5728_length_173_cov_1.654412_g5551_i0 PRJEB25583 5728 173 1.654412 2.86213276 Chlamydomonas bacca 51684 Plants Plants 252 1.33e-62   NTclustered gi|15281658|gb|AF395498.1| 51684 g5551 i0 99.281 80.3988439306358 139 1 80 0 1 139 285 147 Chlamydomonas bacca strain SAG 24.87 voucher SAG:24.87 26S ribosomal RNA gene, partial sequence blastn 13909 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas bacca
12776564 12776564 PRJEB25583_P_NODE_3451_length_218_cov_1.259669_g3274_i0 PRJEB25583 3451 218 1.259669 2.74607842 Ulva compressa 63659 Plants Plants 195 3.0299999999999997e-45   NTclustered gi|2043344467|gb|MW353781.1| 63659 g3274 i0 83.732 115.954128440367 209 31 96 3 7 215 69552 69347 Ulva compressa isolate Uco3 plastid, complete genome blastn 25278 195 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva compressa
16599811 16599811 PRJEB25583_P_NODE_4954_length_184_cov_3.000000_g4777_i0 PRJEB25583 4954 184 3 5.52 Chlamydomonas nivalis 47906 Plants Plants 124 3.28e-24   NTclustered gi|952952715|gb|KT624640.1| 47906 g4777 i0 81.41 2.54347826086957 156 25 83 4 19 171 3403 3249 Chlamydomonas nivalis clone contig00011 chloroplast, partial genome blastn 468 124 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas nivalis
22663404 22663404 PRJEB25583_P_NODE_6338_length_166_cov_1.596899_g6161_i0 PRJEB25583 6338 166 1.596899 2.65085234 Chlorophyta 3041 Plants Plants 302 1.2500000000000001e-77   NTclustered gi|1518373083|gb|MK201746.1| 152768 g6161 i0 99.398 97.0602409638554 166 1 100 0 1 166 1010 845 Diplosphaera chodatii strain KZ-26-5 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16112 302 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera chodatii
22974987 22974987 PRJEB25583_P_NODE_8279_length_151_cov_1.315789_g8102_i0 PRJEB25583 8279 151 1.315789 1.98684139 Chlamydomonas incerta 51695 Plants Plants 132 1.54e-26   NTclustered gi|87313230|gb|DQ370101.1| 51695 g8102 i0 84.559 1.63576158940397 136 17 89 4 3 136 340 473 Chlamydomonas incerta strain SAG 7.73 light-harvesting chlorophyll-a/b binding protein LhcbM8 mRNA, partial cds blastn 247 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;