RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB25583", tax_clade = "Luna-1 subcluster" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Luna-1 subcluster · 3 ✖

bioproject 1

  • PRJEB25583 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6089498 6089498 PRJEB25583_P_NODE_2405_length_264_cov_11.700441_g2228_i0 PRJEB25583 2405 264 11.700441 30.88916424 Rhodoluna 529883 Bacteria Bacteria 366 7.58e-97   NTclustered gi|1666461687|gb|CP040509.1| 232537 g2228 i0 95.614 141.450757575758 228 10 86 0 16 243 478417 478190 Rhodoluna limnophila strain 27D-LEPI chromosome, complete genome blastn 37343 366 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila
13739860 13739860 PRJEB25583_P_NODE_1611_length_337_cov_12.090000_g1434_i0 PRJEB25583 1611 337 12.09 40.7433 Rhodoluna 529883 Bacteria Bacteria 573 5.489999999999998e-159   NTclustered gi|1666461687|gb|CP040509.1| 232537 g1434 i0 97.329 148.427299703264 337 9 100 0 1 337 478030 477694 Rhodoluna limnophila strain 27D-LEPI chromosome, complete genome blastn 50020 573 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila
20113003 20113003 PRJEB25583_P_NODE_7316_length_157_cov_3.450000_g7139_i0 PRJEB25583 7316 157 3.45 5.4165 Rhodoluna 529883 Bacteria Bacteria 255 9.2e-64   NTclustered gi|1666461687|gb|CP040509.1| 232537 g7139 i0 97.973 115.503184713376 148 2 94 1 9 155 476885 477032 Rhodoluna limnophila strain 27D-LEPI chromosome, complete genome blastn 18134 255 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna limnophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;