RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB25583", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJEB25583 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3537005 3537005 PRJEB25583_P_NODE_4583_length_191_cov_1.753247_g4406_i0 PRJEB25583 4583 191 1.753247 3.34870177 Rubrivirga 1434037 Bacteria Bacteria 198 1.99e-46   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g4406 i0 87.097 199.303664921466 186 10 97 4 1 186 1308849 1308678 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 38067 198 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
20423682 20423682 PRJEB25583_P_NODE_2977_length_235_cov_2.191919_g2800_i0 PRJEB25583 2977 235 2.191919 5.15100965 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 270 5.3399999999999985e-68   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g2800 i0 89.72 630.668085106383 214 18 90 4 1 212 3830455 3830244 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 148207 270 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
23938753 23938753 PRJEB25583_P_NODE_2759_length_244_cov_1.753623_g2582_i0 PRJEB25583 2759 244 1.753623 4.27884012 Rubrivirga 1434037 Bacteria Bacteria 318 1.9699999999999998e-82   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g2582 i0 92.07 296.938524590164 227 16 93 2 15 240 806785 806560 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 72453 318 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;