RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB25583", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJEB25583 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4814272 4814272 PRJEB25583_P_NODE_5384_length_177_cov_6.335714_g5207_i0 PRJEB25583 5384 177 6.335714 11.21421378 Naegleria 5761 Heterolobosea other_Eukaryota 287 3.77e-73   NTclustered gi|2618963742|gb|OR769034.1| 5762 g5207 i0 99.367 9.1864406779661 158 1 89 0 1 158 5719 5562 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1626 287 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
6089536 6089536 PRJEB25583_P_NODE_5385_length_177_cov_5.264286_g5208_i0 PRJEB25583 5385 177 5.264286 9.31778622 Naegleria 5761 Heterolobosea other_Eukaryota 320 3.71e-83   NTclustered gi|2651357780|gb|PP174296.1| 36333 g5208 i0 100 64.0790960451977 173 0 98 0 3 175 2175 2003 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11342 320 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
17874569 17874569 PRJEB25583_P_NODE_1375_length_373_cov_3.116071_g1198_i0 PRJEB25583 1375 373 3.116071 11.62294483 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 571 2.1999999999999993e-158   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g1198 i0 96.522 8.23324396782842 345 12 92 0 10 354 2283 1939 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3071 571 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;