RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB25583", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB25583 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5125404 5125404 PRJEB25583_P_NODE_5465_length_176_cov_5.834532_g5288_i0 PRJEB25583 5465 176 5.834532 10.26877632 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 226 8.269999999999997e-55   NTclustered gi|511487963|gb|JX898537.1| 1260765 g5288 i0 89.888 6.78409090909091 178 14 100 4 1 176 281 456 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 1194 226 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
7675267 7675267 PRJEB25583_P_NODE_5127_length_181_cov_4.555556_g4950_i0 PRJEB25583 5127 181 4.555556 8.24555636 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 198 1.87e-46   NTclustered gi|511487963|gb|JX898537.1| 1260765 g4950 i0 87.429 13.0165745856354 175 18 96 4 1 174 290 119 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2356 198 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
10225738 10225738 PRJEB25583_P_NODE_2589_length_253_cov_14.092593_g2412_i0 PRJEB25583 2589 253 14.092593 35.65426029 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 285 2.08e-72   NTclustered gi|511487963|gb|JX898537.1| 1260765 g2412 i0 89.13 45.1462450592885 230 23 91 2 25 253 80 308 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 11422 285 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;