RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJEB25583", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJEB25583 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22979 22979 PRJEB25583_P_NODE_6201_length_167_cov_2.992308_g6024_i0 PRJEB25583 6201 167 2.992308 4.99715436 Vannella septentrionalis 197531 Discosea other_Eukaryota 148 1.7399999999999999e-31   NTclustered gi|300078499|gb|GU001161.1| 197531 g6024 i0 83.333 8.21556886227545 168 21 97 3 1 162 2589 2755 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1372 148 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
4814250 4814250 PRJEB25583_P_NODE_3524_length_215_cov_4.230337_g3347_i0 PRJEB25583 3524 215 4.230337 9.09522455 Vannella 95228 Discosea other_Eukaryota 372 1.28e-98   NTclustered gi|399764259|gb|JQ271770.1| 1215674 g3347 i0 98.571 96.7255813953488 210 3 98 0 3 212 253 462 Vannella sp. ULLAP 18S ribosomal RNA gene, partial sequence blastn 20796 372 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ULLAP
11501016 11501016 PRJEB25583_P_NODE_5610_length_174_cov_6.532847_g5433_i0 PRJEB25583 5610 174 6.532847 11.36715378 Vannella septentrionalis 197531 Discosea other_Eukaryota 213 6.35e-51   NTclustered gi|300078499|gb|GU001161.1| 197531 g5433 i0 89.205 70.2356321839081 176 12 99 5 2 174 994 1165 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12221 213 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
19148478 19148478 PRJEB25583_P_NODE_5616_length_174_cov_3.218978_g5439_i0 PRJEB25583 5616 174 3.218978 5.60102172 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 119 1.42e-22   NTclustered gi|330902844|gb|JF298248.1| 703021 g5439 i0 88.889 5.3735632183908 99 8 56 2 75 171 1476 1573 Cochliopodium actinophorum clone 1206 18S ribosomal RNA gene, partial sequence blastn 935 119 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
22663409 22663409 PRJEB25583_P_NODE_6618_length_163_cov_1.928571_g6441_i0 PRJEB25583 6618 163 1.928571 3.14357073 Vannella 95228 Discosea other_Eukaryota 268 1.24e-67   NTclustered gi|399764229|gb|JQ271740.1| 1215644 g6441 i0 98.065 90.8895705521472 155 2 95 1 9 163 1809 1656 Vannella sp. ISO4 18S ribosomal RNA gene, partial sequence blastn 14815 268 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ISO4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;