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contig_metadata

10 rows where bioproject = "PRJEB25583" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJEB25583 · 10 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22979 22979 PRJEB25583_P_NODE_6201_length_167_cov_2.992308_g6024_i0 PRJEB25583 6201 167 2.992308 4.99715436 Vannella septentrionalis 197531 Discosea other_Eukaryota 148 1.7399999999999999e-31   NTclustered gi|300078499|gb|GU001161.1| 197531 g6024 i0 83.333 8.21556886227545 168 21 97 3 1 162 2589 2755 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1372 148 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
4814250 4814250 PRJEB25583_P_NODE_3524_length_215_cov_4.230337_g3347_i0 PRJEB25583 3524 215 4.230337 9.09522455 Vannella 95228 Discosea other_Eukaryota 372 1.28e-98   NTclustered gi|399764259|gb|JQ271770.1| 1215674 g3347 i0 98.571 96.7255813953488 210 3 98 0 3 212 253 462 Vannella sp. ULLAP 18S ribosomal RNA gene, partial sequence blastn 20796 372 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ULLAP
5125404 5125404 PRJEB25583_P_NODE_5465_length_176_cov_5.834532_g5288_i0 PRJEB25583 5465 176 5.834532 10.26877632 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 226 8.269999999999997e-55   NTclustered gi|511487963|gb|JX898537.1| 1260765 g5288 i0 89.888 6.78409090909091 178 14 100 4 1 176 281 456 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 1194 226 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
7675267 7675267 PRJEB25583_P_NODE_5127_length_181_cov_4.555556_g4950_i0 PRJEB25583 5127 181 4.555556 8.24555636 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 198 1.87e-46   NTclustered gi|511487963|gb|JX898537.1| 1260765 g4950 i0 87.429 13.0165745856354 175 18 96 4 1 174 290 119 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2356 198 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
8949973 8949973 PRJEB25583_P_NODE_2468_length_260_cov_34.941704_g2291_i0 PRJEB25583 2468 260 34.941704 90.8484304 Amoebozoa sp. SZA19 1089205 Root_unresolved Root_unresolved 459 1.19e-124   NTclustered gi|441475832|emb|FN562422.4| 1089205 g2291 i0 98.462 14.2076923076923 260 4 100 0 1 260 242 501 Amoebozoa sp. SZA19 18S rRNA gene, isolate SZA19 blastn 3694 459 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA19
10225738 10225738 PRJEB25583_P_NODE_2589_length_253_cov_14.092593_g2412_i0 PRJEB25583 2589 253 14.092593 35.65426029 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 285 2.08e-72   NTclustered gi|511487963|gb|JX898537.1| 1260765 g2412 i0 89.13 45.1462450592885 230 23 91 2 25 253 80 308 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 11422 285 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
11501016 11501016 PRJEB25583_P_NODE_5610_length_174_cov_6.532847_g5433_i0 PRJEB25583 5610 174 6.532847 11.36715378 Vannella septentrionalis 197531 Discosea other_Eukaryota 213 6.35e-51   NTclustered gi|300078499|gb|GU001161.1| 197531 g5433 i0 89.205 70.2356321839081 176 12 99 5 2 174 994 1165 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12221 213 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
19148478 19148478 PRJEB25583_P_NODE_5616_length_174_cov_3.218978_g5439_i0 PRJEB25583 5616 174 3.218978 5.60102172 Cochliopodium actinophorum 703021 Discosea other_Eukaryota 119 1.42e-22   NTclustered gi|330902844|gb|JF298248.1| 703021 g5439 i0 88.889 5.3735632183908 99 8 56 2 75 171 1476 1573 Cochliopodium actinophorum clone 1206 18S ribosomal RNA gene, partial sequence blastn 935 119 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium actinophorum
19148480 19148480 PRJEB25583_P_NODE_5676_length_174_cov_1.124088_g5499_i0 PRJEB25583 5676 174 1.124088 1.95591312 Physarum polycephalum 5791 Evosea other_Eukaryota 300 4.73e-77   NTclustered gi|414783|emb|X75592.1| 5791 g5499 i0 97.701 78.632183908046 174 4 100 0 1 174 357 184 P. polycephalum M3C mitochondrial SSU gene for 17S ribosomal RNA(pSSU) blastn 13682 300 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
22663409 22663409 PRJEB25583_P_NODE_6618_length_163_cov_1.928571_g6441_i0 PRJEB25583 6618 163 1.928571 3.14357073 Vannella 95228 Discosea other_Eukaryota 268 1.24e-67   NTclustered gi|399764229|gb|JQ271740.1| 1215644 g6441 i0 98.065 90.8895705521472 155 2 95 1 9 163 1809 1656 Vannella sp. ISO4 18S ribosomal RNA gene, partial sequence blastn 14815 268 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ISO4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;