RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJEB2368" and tax_phylum = "Streptophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2368 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1297146 1297146 PRJEB2368_P_NODE_9342_length_287_cov_1.424000_g9024_i0 PRJEB2368 9342 287 1.424 4.08688 Capsicum annuum 4072 Plants Plants 141 5.510000000000001e-29   NTclustered gi|1700446406|dbj|LC434383.1| 4072 g9024 i0 100 0.777003484320557 76 0 53 0 1 76 3694 3619 Capsicum annuum DNA, retrotransposon: CopiaCa_06 blastn 223 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
2572766 2572766 PRJEB2368_P_NODE_10083_length_287_cov_1.308000_g9765_i0 PRJEB2368 10083 287 1.308 3.75396 Cucumis melo 3656 Plants Plants 54.7 0.007   NTclustered gi|733601800|emb|LN681932.1| 3656 g9765 i0 100 0.592334494773519 29 0 10 0 7 35 7001703 7001731 Cucumis melo genomic scaffold, anchoredscaffold00001 blastn 170 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis melo
3536946 3536946 PRJEB2368_P_NODE_9283_length_287_cov_1.432000_g8965_i0 PRJEB2368 9283 287 1.432 4.10984 Musa 4640 Plants Plants 141 5.510000000000001e-29   NTclustered gi|2008914241|emb|HG996476.1| 214687 g8965 i0 100 1.32752613240418 76 0 53 0 212 287 24781412 24781487 Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A10 blastn 381 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Musa Musa acuminata
6089313 6089313 PRJEB2368_P_NODE_10945_length_286_cov_1.514056_g10627_i0 PRJEB2368 10945 286 1.514056 4.33020016 Poaceae 4479 Plants Plants 134 9.18e-27   NTclustered gi|217426764|gb|FJ447462.1| 4565 g10627 i0 98.667 392.744755244755 75 1 26 0 1 75 53457 53383 Triticum aestivum cultivar Glenlea clone TaBAC703A9, complete sequence blastn 112325 134 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
7363980 7363980 PRJEB2368_P_NODE_14386_length_165_cov_1.328125_g14067_i0 PRJEB2368 14386 165 1.328125 2.19140625 Eukaryota 2759 Plants Plants 128 2.23e-25   NTclustered gi|1117404786|ref|XM_019557156.1| 3871 g14067 i0 87.963 14.0242424242424 108 13 65 0 11 118 320 213 PREDICTED: Lupinus angustifolius peptidyl-prolyl cis-trans isomerase-like (LOC109325010), mRNA blastn 2314 128 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lupinus Lupinus angustifolius
7364086 7364086 PRJEB2368_P_NODE_9466_length_287_cov_1.404000_g9148_i0 PRJEB2368 9466 287 1.404 4.02948 Poaceae 4479 Plants Plants 141 5.510000000000001e-29   NTclustered gi|299109310|emb|FN564426.1| 4565 g9148 i0 100 50.6132404181185 76 0 53 0 1 76 496401 496326 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0005b blastn 14526 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
9914516 9914516 PRJEB2368_P_NODE_7828_length_287_cov_1.848000_g7510_i0 PRJEB2368 7828 287 1.848 5.30376 Triticum 4564 Plants Plants 128 4.29e-25   NTclustered gi|188038071|gb|EU660892.1| 4565 g7510 i0 97.333 5.97909407665505 75 2 26 0 1 75 44908 44982 Triticum aestivum clone BAC 1354M21 cytosolic acetyl-CoA carboxylase (Acc-2) and putative amino acid permeases genes, complete cds blastn 1716 128 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
11500932 11500932 PRJEB2368_P_NODE_7150_length_287_cov_2.576000_g6832_i0 PRJEB2368 7150 287 2.576 7.39312 Brassica rapa 3711 Plants Plants 52.8 0.027   NTclustered gi|199579930|gb|AC189247.2| 51351 g6832 i0 100 0.0975609756097561 28 0 10 0 221 248 12274 12301 Brassica rapa subsp. pekinensis cultivar Inbred line """"Chiifu"""" clone KBrB018K09, complete sequence blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
12776468 12776468 PRJEB2368_P_NODE_10371_length_287_cov_1.236000_g10053_i0 PRJEB2368 10371 287 1.236 3.54732 Populus trichocarpa 3694 Plants Plants 54.7 0.007   NTclustered gi|164663928|gb|AC216604.1| 3694 g10053 i0 100 0.101045296167247 29 0 10 0 215 243 73740 73712 Populus trichocarpa clone POP097-J13, complete sequence blastn 29 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus trichocarpa
12776470 12776470 PRJEB2368_P_NODE_10591_length_287_cov_1.104000_g10273_i0 PRJEB2368 10591 287 1.104 3.16848 Glycine max 3847 Plants Plants 141 5.510000000000001e-29   NTclustered gi|224923230|gb|AC235466.1| 3847 g10273 i0 100 12.9477351916376 76 0 51 0 1 76 22258 22333 Glycine max strain Williams 82 clone GM_WBb0172G11, complete sequence blastn 3716 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
12776488 12776488 PRJEB2368_P_NODE_3151_length_463_cov_1.807512_g2850_i0 PRJEB2368 3151 463 1.807512 8.36878056 Mangifera indica 29780 Plants Plants 198 5.4599999999999996e-46   NTclustered gi|2118882533|ref|XM_044613347.1| 29780 g2850 i0 84.925 46.5421166306695 199 26 43 4 257 453 1038 1234 PREDICTED: Mangifera indica tubulin alpha chain-like (LOC123198624), mRNA blastn 21549 198 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Anacardiaceae Mangifera Mangifera indica
12776525 12776525 PRJEB2368_P_NODE_9051_length_287_cov_1.472000_g8733_i0 PRJEB2368 9051 287 1.472 4.22464 Solanum lycopersicum 4081 Plants Plants 135 2.56e-27   NTclustered gi|401871087|gb|AC247102.3| 4081 g8733 i0 98.684 49.9163763066202 76 1 53 0 212 287 30273 30198 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-68p5 map 11, complete sequence blastn 14326 135 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
14050997 14050997 PRJEB2368_P_NODE_10232_length_287_cov_1.276000_g9914_i0 PRJEB2368 10232 287 1.276 3.66212 Capsicum annuum 4072 Plants Plants 134 9.21e-27   NTclustered gi|1059048066|gb|KU997025.1| 4072 g9914 i0 98.667 4.08710801393728 75 1 53 0 213 287 156126 156200 Capsicum annuum, 6 clones, complete sequence blastn 1173 134 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
14051019 14051019 PRJEB2368_P_NODE_13772_length_174_cov_1.708029_g13453_i0 PRJEB2368 13772 174 1.708029 2.97197046 Trichophorum cespitosum 76515 Plants Plants 52.8 0.015   NTclustered gi|2919515580|emb|OZ238279.1| 76515 g13453 i0 100 0.160919540229885 28 0 16 0 7 34 3206494 3206521 Trichophorum cespitosum genome assembly, chromosome: 11 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Cyperaceae Trichophorum Trichophorum cespitosum
16599754 16599754 PRJEB2368_P_NODE_9214_length_287_cov_1.440000_g8896_i0 PRJEB2368 9214 287 1.44 4.1328 Solanum lycopersicum 4081 Plants Plants 141 5.510000000000001e-29   NTclustered gi|347582692|gb|AC245354.4| 4081 g8896 i0 100 0.529616724738676 76 0 53 0 212 287 62584 62509 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-50l24 map 10, complete sequence blastn 152 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
17874524 17874524 PRJEB2368_P_NODE_8435_length_287_cov_1.628000_g8117_i0 PRJEB2368 8435 287 1.628 4.67236 Solanum lycopersicum 4081 Plants Plants 130 1.19e-25   NTclustered gi|308044643|gb|AC233126.17| 4081 g8117 i0 97.368 8.44947735191638 76 2 53 0 1 76 60422 60347 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-162g22 map 1, complete sequence blastn 2425 130 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
20112918 20112918 PRJEB2368_P_NODE_7476_length_287_cov_2.052000_g7158_i0 PRJEB2368 7476 287 2.052 5.88924 Glycine 3846 Plants Plants 141 5.510000000000001e-29   NTclustered gi|2027451349|ref|XM_003519057.5| 3847 g7158 i0 100 3.17770034843206 76 0 26 0 1 76 320 245 PREDICTED: Glycine max uncharacterized protein (LOC100805715), mRNA blastn 912 141 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
21388485 21388485 PRJEB2368_P_NODE_9097_length_287_cov_1.464000_g8779_i0 PRJEB2368 9097 287 1.464 4.20168 Poaceae 4479 Plants Plants 130 1.19e-25   NTclustered gi|194239064|emb|AM932682.1| 4565 g8779 i0 97.368 30.9268292682927 76 2 26 0 1 76 166215 166290 Triticum aestivum 3B chromosome, clone BAC TA3B63B7 blastn 8876 130 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
21699620 21699620 PRJEB2368_P_NODE_15138_length_157_cov_1.566667_g14819_i0 PRJEB2368 15138 157 1.566667 2.45966719 Lolium perenne 4522 Plants Plants 62.1 2.15e-5   NTclustered gi|2922430240|ref|XR_011750182.1| 4522 g14819 i0 100 21.0445859872611 33 0 21 0 1 33 2252 2220 PREDICTED: Lolium perenne 28S ribosomal RNA (LOC139834477), rRNA blastn 3304 62.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Lolium Lolium perenne
24248708 24248708 PRJEB2368_P_NODE_10960_length_286_cov_1.489960_g10642_i0 PRJEB2368 10960 286 1.48996 4.2612856 Triticum aestivum 4565 Plants Plants 139 1.9699999999999999e-28   NTclustered gi|1282798539|gb|MG560142.1| 4565 g10642 i0 100 42.0734265734266 75 0 53 0 212 286 1073828 1073754 Triticum aestivum omega gliadin-D1, omega gliadin-D2, omega gliadin-D3, gamma gliadin-D1, delta gliadin-D1, gamma gliadin-D2, gamma gliadin-D3, gamma gliadin-D4, LMW-D1, LMW-D2, LMW-D3, LMW-D6, and LMW-D7 genes, complete cds blastn 12033 139 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
27722165 27722165 PRJEB2368_P_NODE_15764_length_152_cov_1.365217_g15445_i0 PRJEB2368 15764 152 1.365217 2.07512984 Eukaryota 2759 Plants Plants 61.6 2.32e-9   NR PTQ32829.1 3197 g15445 i0 60 63.0789473684211 50 20 98.7 0 150 1 207 256 PTQ32829.1 hypothetical protein MARPO_0094s0010 [Marchantia polymorpha] diamond 9588 62 0.993548387096774 Eukaryota Embryophyta Viridiplantae Streptophyta Marchantiopsida Marchantiales Marchantiaceae Marchantia Marchantia polymorpha
29047993 29047993 PRJEB2368_P_NODE_15568_length_153_cov_2.094828_g15249_i0 PRJEB2368 15568 153 2.094828 3.20508684 Closterium 34145 Plants Plants 54.3 7.61e-7   NR CAI5488445.1 2996811 g15249 i0 49 3.84313725490196 49 25 96.1 0 147 1 86 134 CAI5488445.1 unnamed protein product [Closterium sp. Naga37s-1] diamond 588 54.7 0.992687385740402 Eukaryota   Viridiplantae Streptophyta Zygnematophyceae Desmidiales Closteriaceae Closterium Closterium sp. Naga37s-1
32720018 32720018 PRJEB2368_P_NODE_12740_length_196_cov_1.798742_g12421_i0 PRJEB2368 12740 196 1.798742 3.5255343200000002 Klebsormidium nitens 105231 Plants Plants 64.7 2.73e-10   NR GAQ78914.1 105231 g12421 i0 47.6 0.964285714285714 63 33 96.4 0 7 195 192 254 GAQ78914.1 hypothetical protein KFL_000200670 [Klebsormidium nitens] diamond 189 64.7 1 Eukaryota   Viridiplantae Streptophyta Klebsormidiophyceae Klebsormidiales Klebsormidiaceae Klebsormidium Klebsormidium nitens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;