RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJEB2368" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJEB2368 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22875 22875 PRJEB2368_P_NODE_10601_length_287_cov_1.084000_g10283_i0 PRJEB2368 10601 287 1.084 3.11108 Arcobacter suis 1278212 Bacteria Bacteria 141 5.510000000000001e-29   NTclustered gi|1474790806|gb|CP032100.1| 663365 g10283 i0 100 1.46689895470383 76 0 53 0 212 287 804360 804285 Arcobacter suis CECT 7833 chromosome, complete genome blastn 421 141 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter suis
2261698 2261698 PRJEB2368_P_NODE_9782_length_287_cov_1.360000_g9464_i0 PRJEB2368 9782 287 1.36 3.9032 Aliarcobacter 2321111 Bacteria Bacteria 141 5.510000000000001e-29   NTclustered gi|1534011987|gb|CP034309.1| 28200 g9464 i0 100 1.05923344947735 76 0 53 0 1 76 71965 71890 Aliarcobacter skirrowii strain A2S6 chromosome, complete genome blastn 304 141 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter skirrowii
5125288 5125288 PRJEB2368_P_NODE_10545_length_287_cov_1.156000_g10227_i0 PRJEB2368 10545 287 1.156 3.31772 Campylobacter sp. RM5004 1660078 Bacteria Bacteria 52.8 0.027   NTclustered gi|2198378962|gb|CP059599.1| 1660078 g10227 i0 96.774 0.10801393728223 31 1 11 0 247 277 1474530 1474500 Campylobacter sp. RM5004 chromosome, complete genome blastn 31 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. RM5004
7364088 7364088 PRJEB2368_P_NODE_9946_length_287_cov_1.328000_g9628_i0 PRJEB2368 9946 287 1.328 3.81136 Aliarcobacter 2321111 Bacteria Bacteria 141 5.510000000000001e-29   NTclustered gi|1898123824|gb|CP060693.1| 28198 g9628 i0 100 14.2264808362369 76 0 53 0 1 76 897511 897586 Aliarcobacter cryaerophilus strain 16CS1285-4 chromosome, complete genome blastn 4083 141 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
9914434 9914434 PRJEB2368_P_NODE_14608_length_162_cov_1.872000_g14289_i0 PRJEB2368 14608 162 1.872 3.03264 Pseudomonadati 3379134 Bacteria Bacteria 300 4.36e-77   NTclustered gi|1226876681|gb|CP022559.1| 197 g14289 i0 100 100 162 0 100 0 1 162 701280 701119 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 16200 300 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
11500914 11500914 PRJEB2368_P_NODE_11010_length_286_cov_1.425703_g10692_i0 PRJEB2368 11010 286 1.425703 4.07751058 Aliarcobacter cryaerophilus 28198 Bacteria Bacteria 132 3.3e-26   NTclustered gi|2317587505|gb|CP099556.1| 28198 g10692 i0 98.649 7.26573426573427 74 1 26 0 212 285 1947456 1947383 Aliarcobacter cryaerophilus strain ICDCAC48 chromosome, complete genome blastn 2078 132 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
12465346 12465346 PRJEB2368_P_NODE_10050_length_287_cov_1.312000_g9732_i0 PRJEB2368 10050 287 1.312 3.76544 Bacteria 2 Bacteria Bacteria 67.6 9.48e-7   NTclustered gi|1666442357|gb|CP040463.1| 391592 g9732 i0 93.333 0.43205574912892 45 3 16 0 2 46 1071961 1071917 Caminibacter mediatlanticus TB-2 chromosome, complete genome blastn 124 67.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Caminibacter Caminibacter mediatlanticus
16289086 16289086 PRJEB2368_P_NODE_9313_length_287_cov_1.428000_g8995_i0 PRJEB2368 9313 287 1.428 4.09836 Aliarcobacter 2321111 Bacteria Bacteria 141 5.510000000000001e-29   NTclustered gi|1898125941|gb|CP060694.1| 28198 g8995 i0 100 8.93728222996516 76 0 26 0 1 76 5258 5333 Aliarcobacter cryaerophilus strain 16CS1292-4 chromosome, complete genome blastn 2565 141 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
20112926 20112926 PRJEB2368_P_NODE_9496_length_287_cov_1.400000_g9178_i0 PRJEB2368 9496 287 1.4 4.018 Aliarcobacter 2321111 Bacteria Bacteria 108 5.58e-19   NTclustered gi|1231709647|emb|LT906455.1| 28197 g9178 i0 92.105 5.16376306620209 76 6 26 0 1 76 293460 293385 Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1 blastn 1482 108 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
24248756 24248756 PRJEB2368_P_NODE_8920_length_287_cov_1.496000_g8602_i0 PRJEB2368 8920 287 1.496 4.29352 Arcobacter aquimarinus 1315211 Bacteria Bacteria 69.4 2.64e-7   NTclustered gi|1845961186|gb|CP030944.1| 1315211 g8602 i0 82.895 0.797909407665505 76 13 26 0 212 287 2261899 2261974 Arcobacter aquimarinus strain W63 chromosome, complete genome blastn 229 69.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter aquimarinus
26716202 26716202 PRJEB2368_P_NODE_4681_length_359_cov_2.006211_g4367_i0 PRJEB2368 4681 359 2.006211 7.20229749 Helicobacter pylori 210 Bacteria Bacteria 60.8 1.4e-9   NR GAA8732559.1 210 g4367 i0 93.1 0.242339832869081 29 2 24.2 0 272 358 1 29 GAA8732559.1 hypothetical protein Kyoto147A_0770 [Helicobacter pylori] diamond 87 60.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;