RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB2368" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJEB2368 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2261609 2261609 PRJEB2368_P_NODE_15502_length_154_cov_1.205128_g15183_i0 PRJEB2368 15502 154 1.205128 1.85589712 Cutibacterium 1912216 Bacteria Bacteria 257 2.5e-64   NTclustered gi|208972183|gb|FJ222608.1| 1747 g15183 i0 96.753 235.448051948052 154 5 100 0 1 154 173 20 Propionibacterium acnes strain CCARM9035 23S ribosomal RNA gene, partial sequence blastn 36259 257 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
26875266 26875266 PRJEB2368_P_NODE_10521_length_287_cov_1.172000_g10203_i0 PRJEB2368 10521 287 1.172 3.36364 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 45.1 0.00919   NR HEV3212833.1 2201156 g10203 i0 86.4 0.229965156794425 22 3 23 0 280 215 256 277 HEV3212833.1 N-methyl-L-tryptophan oxidase [Acidimicrobiales bacterium] diamond 66 45.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;