RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB2368", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB2368 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30318076 30318076 PRJEB2368_P_NODE_10012_length_287_cov_1.320000_g9694_i0 PRJEB2368 10012 287 1.32 3.7884 Spirochaetota bacterium 2202144 Bacteria Bacteria 46.2 0.00385   NR TXG80843.1 2202144 g9694 i0 36.8 0.909407665505226 87 10 90.9 1 265 5 679 720 TXG80843.1 MAG: hypothetical protein E6R13_07385 [Spirochaetota bacterium] diamond 261 46.2 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
30886247 30886247 PRJEB2368_P_NODE_7774_length_287_cov_1.876000_g7456_i0 PRJEB2368 7774 287 1.876 5.38412 Leptospiraceae bacterium 2026757 Bacteria Bacteria 65.5 6.26e-10   NR NUM42312.1 2026757 g7456 i0 40.9 0.97212543554007 93 23 97.2 1 1 279 425 485 NUM42312.1 dienelactone hydrolase family protein [Leptospiraceae bacterium] diamond 279 65.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;