RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB2368", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB2368 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26653044 26653044 PRJEB2368_P_NODE_5381_length_331_cov_1.639456_g5063_i0 PRJEB2368 5381 331 1.639456 5.42659936 Myxococcales bacterium 2026763 Bacteria Bacteria 50.4 1.93e-4   NR HIA01289.1 2026763 g5063 i0 52.2 0.416918429003021 46 21 41.7 1 330 193 147 191 HIA01289.1 hypothetical protein [Myxococcales bacterium] diamond 138 50.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30033290 30033290 PRJEB2368_P_NODE_4151_length_387_cov_3.460000_g3839_i0 PRJEB2368 4151 387 3.46 13.3902 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.9 0.00599   NR MCE3239743.1 2026735 g3839 i0 60.5 0.294573643410853 38 15 29.5 0 213 100 19 56 MCE3239743.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 114 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;