RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB2368", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJEB2368 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30601776 30601776 PRJEB2368_P_NODE_8433_length_287_cov_1.628000_g8115_i0 PRJEB2368 8433 287 1.628 4.67236 Bacteriovorax sp. 2608087 Bacteria Bacteria 64.3 1.63e-9   NR MBC7538368.1 2608087 g8115 i0 42.1 1.98606271777003 95 28 99.3 1 3 287 631 698 MBC7538368.1 carboxy terminal-processing peptidase [Bacteriovorax sp.] diamond 570 64.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
32214532 32214532 PRJEB2368_P_NODE_9158_length_287_cov_1.452000_g8840_i0 PRJEB2368 9158 287 1.452 4.16724 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 44.3 0.0162   NR MBL7545342.1 2026715 g8840 i0 34.1 0.951219512195122 91 39 95.1 1 6 278 204 273 MBL7545342.1 protein-glutamate O-methyltransferase CheR [Pseudobdellovibrionaceae bacterium] diamond 273 44.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;