RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB2368", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJEB2368 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22878 22878 PRJEB2368_P_NODE_10821_length_286_cov_1.738956_g10503_i0 PRJEB2368 10821 286 1.738956 4.97341416 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.007   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g10503 i0 100 2.36013986013986 29 0 10 0 1 29 6001451 6001423 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 675 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
6401032 6401032 PRJEB2368_P_NODE_14086_length_169_cov_1.477273_g13767_i0 PRJEB2368 14086 169 1.477273 2.49659137 Planorbarius corneus 240818 Mollusca Mollusca 176 8.03e-40   NTclustered gi|42821988|gb|AY465084.1| 240818 g13767 i0 86.061 97.0295857988166 165 21 97 2 6 169 328 165 Planorbarius corneus actin gene, exon 2 and partial cds blastn 16398 176 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Planorbarius Planorbarius corneus
31796531 31796531 PRJEB2368_P_NODE_5217_length_337_cov_1.113333_g4899_i0 PRJEB2368 5217 337 1.113333 3.75193221 Opisthokonta 33154 Mollusca Mollusca 56.6 1.49e-6   NR BFZ07074.1 145626 g4899 i0 43.1 4.88724035608309 65 36 57 1 14 205 449 513 BFZ07074.1 hypothetical protein BsWGS_10113 [Bradybaena similaris] diamond 1647 56.6 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;