RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB2368" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJEB2368 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30127689 30127689 PRJEB2368_P_NODE_4232_length_383_cov_2.442197_g3919_i0 PRJEB2368 4232 383 2.442197 9.35361451 Physarum polycephalum 5791 Evosea other_Eukaryota 82.4 1.79e-16   NR ABD72560.1 5791 g3919 i0 63.3 0.469973890339426 60 22 47 0 4 183 104 163 ABD72560.1 chitinase-like protein cluster D, partial [Physarum polycephalum] diamond 180 82.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
31992978 31992978 PRJEB2368_P_NODE_12238_length_215_cov_1.275281_g11919_i0 PRJEB2368 12238 215 1.275281 2.74185415 Physarum polycephalum 5791 Evosea other_Eukaryota 63.5 2.02e-10   NR ABD72561.1 5791 g11919 i0 45.1 1.96744186046512 71 37 99.1 1 2 214 18 86 ABD72561.1 chitinase-like protein cluster E, partial [Physarum polycephalum] diamond 423 63.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
32024689 32024689 PRJEB2368_P_NODE_15118_length_157_cov_1.841667_g14799_i0 PRJEB2368 15118 157 1.841667 2.89141719 Physarum polycephalum 5791 Evosea other_Eukaryota 56.6 2.04e-8   NR ABD72563.1 5791 g14799 i0 51.9 2.06369426751592 54 23 97.5 1 2 154 64 117 ABD72563.1 chitinase-like protein cluster G, partial [Physarum polycephalum] diamond 324 56.6 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;