RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJEB2333", tax_phylum = "Streptophyta" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 7 ✖

tax_phylum 1

  • Streptophyta · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2333 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7363862 7363862 PRJEB2333_P_NODE_3046_length_439_cov_1.325871_g2271_i0 PRJEB2333 3046 439 1.325871 5.82057369 Magnoliopsida 3398 Plants Plants 267 1.39e-66   NTclustered gi|2154030858|gb|OK440405.1| 3702 g2271 i0 100 416.396355353075 144 0 51 0 1 144 7515743 7515600 Arabidopsis thaliana, partial genome blastn 182798 267 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
13739604 13739604 PRJEB2333_P_NODE_3211_length_415_cov_6.412698_g2436_i0 PRJEB2333 3211 415 6.412698 26.6126967 Magnoliopsida 3398 Plants Plants 289 2.7899999999999996e-73   NTclustered gi|2699132188|emb|OZ022203.1| 3755 g2436 i0 100 63.4409638554217 156 0 57 0 260 415 1211182 1211337 Prunus dulcis genome assembly, chromosome: 7 blastn 26328 289 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Prunus Prunus dulcis
25212254 25212254 PRJEB2333_P_NODE_3600_length_234_cov_6.289340_g2823_i0 PRJEB2333 3600 234 6.28934 14.7170556 Streptophyta 35493 Plants Plants 119 2.04e-22   NTclustered gi|8099444|gb|AF226036.1| 3234 g2823 i0 85.124 38.2735042735043 121 12 51 5 13 132 379 264 Anthoceros punctatus 26S ribosomal RNA gene, partial sequence blastn 8956 119 1 Eukaryota Embryophyta Viridiplantae Streptophyta Anthocerotopsida Anthocerotales Anthocerotaceae Anthoceros Anthoceros punctatus
28359510 28359510 PRJEB2333_P_NODE_2666_length_517_cov_1.614583_g1896_i0 PRJEB2333 2666 517 1.614583 8.34739411 Lotus japonicus 34305 Plants Plants 125 7.659999999999999e-32   NR AFK41760.1 34305 g1896 i0 69.5 0.475822050290135 82 25 47.6 0 3 248 117 198 AFK41760.1 unknown [Lotus japonicus] diamond 246 125 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Lotus Lotus japonicus
29843640 29843640 PRJEB2333_P_NODE_4031_length_185_cov_1.979730_g3254_i0 PRJEB2333 4031 185 1.97973 3.6625005 Oldenlandia corymbosa var. corymbosa 529605 Plants Plants 67.4 3.45e-11   NR CAI9092419.1 529605 g3254 i0 56.5 1.92972972972973 62 23 94.1 2 185 12 17 78 CAI9092419.1 OLC1v1027649C1 [Oldenlandia corymbosa var. corymbosa] diamond 357 67.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Gentianales Rubiaceae Oldenlandia Oldenlandia corymbosa
31075952 31075952 PRJEB2333_P_NODE_3175_length_420_cov_1.443864_g2400_i0 PRJEB2333 3175 420 1.443864 6.0642288 Ceratodon purpureus 3225 Plants Plants 46.6 0.00697   NR KAG0603130.1 3225 g2400 i0 57.9 0.542857142857143 38 15 27.1 1 296 409 158 194 KAG0603130.1 hypothetical protein M758_10G068800, partial [Ceratodon purpureus] diamond 228 46.6 1 Eukaryota Embryophyta Viridiplantae Streptophyta Bryopsida Pseudoditrichales Ditrichaceae Ceratodon Ceratodon purpureus
32144803 32144803 PRJEB2333_P_NODE_2838_length_473_cov_1.011468_g2066_i0 PRJEB2333 2838 473 1.011468 4.78424364 Magnoliopsida 3398 Plants Plants 80.1 1.54e-15   NR ACN25506.1 4577 g2066 i0 38.4 47.3213530655391 146 72 92.6 1 472 35 13 140 ACN25506.1 unknown [Zea mays] diamond 22383 80.9 0.990111248454882 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;