RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB2333" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2333 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5125281 5125281 PRJEB2333_P_NODE_4365_length_166_cov_2.356589_g3588_i0 PRJEB2333 4365 166 2.356589 3.91193774 Halichondria panicea 6063 Porifera other_Eukaryota 148 1.7199999999999995e-31   NTclustered gi|2719012651|ref|XM_064540040.1| 6063 g3588 i0 83.974 8.09638554216867 156 23 97 2 10 164 270 116 PREDICTED: Halichondria panicea polyubiquitin (LOC135343089), mRNA blastn 1344 148 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
11189499 11189499 PRJEB2333_P_NODE_3589_length_238_cov_1.592040_g2812_i0 PRJEB2333 3589 238 1.59204 3.7890552 Tetractinellida 1779164 Porifera other_Eukaryota 132 2.67e-26   NTclustered gi|512765374|gb|KC869612.1| 1183873 g2812 i0 86.777 48.8235294117647 121 13 50 2 103 222 2026 2144 Stelletta fibrosa voucher P24 28S ribosomal RNA gene, partial sequence blastn 11620 132 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Tetractinellida Geodiidae Geodia Geodia fibrosa
14050987 14050987 PRJEB2333_P_NODE_2892_length_462_cov_1.296471_g2120_i0 PRJEB2333 2892 462 1.296471 5.98969602 Aphrocallistes beatrix 398365 Porifera other_Eukaryota 63.9 2.07e-5   NTclustered gi|222419933|emb|FM946126.1| 398365 g2120 i0 91.489 0.101731601731602 47 3 10 1 1 47 676 721 Aphrocallistes beatrix partial 28S rRNA gene blastn 47 63.9 1 Eukaryota Opisthokonta Metazoa Porifera Hexactinellida Sceptrulophora Aphrocallistidae Aphrocallistes Aphrocallistes beatrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;