RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB2333" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB2333 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3536714 3536714 PRJEB2333_P_NODE_3303_length_404_cov_1.643052_g2527_i0 PRJEB2333 3303 404 1.643052 6.63793008 Globodera 31242 Nematoda Nematoda 204 1.0099999999999999e-47   NTclustered gi|2437461996|gb|ON496988.1| 31243 g2527 i0 100 21.8836633663366 110 0 49 0 295 404 4695 4586 Globodera rostochiensis isolate Ro1-5 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 8841 204 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera rostochiensis
3536735 3536735 PRJEB2333_P_NODE_4283_length_170_cov_1.947368_g3506_i0 PRJEB2333 4283 170 1.947368 3.3105256 Globodera 31242 Nematoda Nematoda 315 1.64e-81   NTclustered gi|2437461996|gb|ON496988.1| 31243 g3506 i0 100 99.3705882352941 170 0 100 0 1 170 5685 5516 Globodera rostochiensis isolate Ro1-5 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 16893 315 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera rostochiensis
8639245 8639245 PRJEB2333_P_NODE_2687_length_511_cov_1.354430_g1917_i0 PRJEB2333 2687 511 1.35443 6.9211373 Globodera 31242 Nematoda Nematoda 392 2.5899999999999998e-104   NTclustered gi|2437461996|gb|ON496988.1| 31243 g1917 i0 99.535 58.7162426614481 215 1 70 0 1 215 5320 5106 Globodera rostochiensis isolate Ro1-5 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 30004 392 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera rostochiensis
12465282 12465282 PRJEB2333_P_NODE_2270_length_733_cov_5.102011_g1525_i0 PRJEB2333 2270 733 5.102011 37.39774063 Heteroderidae 6301 Nematoda Nematoda 521 4.6499999999999985e-143   NTclustered gi|51093962|gb|AY593877.1| 31243 g1525 i0 99.306 88.5511596180082 288 2 91 0 23 310 828 541 Globodera rostochiensis strain GlobRos1 1 rb47+rb51 18S ribosomal RNA gene, partial sequence blastn 64908 521 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera rostochiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;