RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB2333" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB2333 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2261445 2261445 PRJEB2333_P_NODE_3722_length_215_cov_1.477528_g2945_i0 PRJEB2333 3722 215 1.477528 3.1766852 Cetobacterium 180162 Bacteria Bacteria 381 2.1299999999999996e-101   NTclustered gi|2865368125|gb|CP122294.1| 188913 g2945 i0 98.611 482.772093023256 216 2 100 1 1 215 279834 279619 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 103796 381 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
4813959 4813959 PRJEB2333_P_NODE_2584_length_548_cov_1.504892_g1815_i0 PRJEB2333 2584 548 1.504892 8.24680816 Cetobacterium 180162 Bacteria Bacteria 344 7.94e-90   NTclustered gi|2865368125|gb|CP122294.1| 188913 g1815 i0 100 321.149635036496 186 0 69 0 363 548 279305 279120 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 175990 344 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
4813972 4813972 PRJEB2333_P_NODE_3644_length_227_cov_1.789474_g2867_i0 PRJEB2333 3644 227 1.789474 4.06210598 Fusobacteriaceae 203492 Bacteria Bacteria 322 1.4e-83   NTclustered gi|2705042081|gb|CP085192.1| 856 g2867 i0 98.361 483.044052863436 183 3 81 0 1 183 156775 156593 Fusobacterium varium strain SB069 chromosome blastn 109651 322 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
17564008 17564008 PRJEB2333_P_NODE_2554_length_563_cov_6.199620_g1786_i0 PRJEB2333 2554 563 6.19962 34.9038606 Cetobacterium 180162 Bacteria Bacteria 784 0   NTclustered gi|2865366169|gb|CP122292.1| 188913 g1786 i0 92.115 46.3747779751332 558 40 99 4 8 563 1485420 1484865 Cetobacterium somerae strain MSU41 chromosome, complete genome blastn 26109 784 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;