RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB2333", tax_phylum = "Endomyxa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB2333 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10225638 10225638 PRJEB2333_P_NODE_3469_length_313_cov_2.119565_g2692_i0 PRJEB2333 3469 313 2.119565 6.63423845 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 137 2.42e-38   NR CEO98457.1 37360 g2692 i0 64.4 0.996805111821086 104 37 99.7 0 313 2 43 146 CEO98457.1 hypothetical protein PBRA_006571 [Plasmodiophora brassicae] diamond 312 137 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27633569 27633569 PRJEB2333_P_NODE_4724_length_155_cov_0.991525_g3947_i0 PRJEB2333 4724 155 0.991525 1.53686375 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 40.8 0.0316   NR CEO99081.1 37360 g3947 i0 60.6 0.638709677419355 33 13 63.9 0 15 113 109 141 CEO99081.1 hypothetical protein PBRA_007195 [Plasmodiophora brassicae] diamond 99 40.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31676530 31676530 PRJEB2333_P_NODE_3137_length_427_cov_0.789744_g2362_i0 PRJEB2333 3137 427 0.789744 3.37220688 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 61.2 8.82e-9   NR CEO95161.1 37360 g2362 i0 78.8 0.231850117096019 33 7 23.2 0 398 300 1 33 CEO95161.1 hypothetical protein PBRA_003927 [Plasmodiophora brassicae] diamond 99 61.2 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;