RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJEB2333" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB2333 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10225637 10225637 PRJEB2333_P_NODE_3149_length_424_cov_1.873385_g2374_i0 PRJEB2333 3149 424 1.873385 7.9431524 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 198 5.38e-62   NR XP_026191109.1 88456 g2374 i0 74.4 59.2712264150943 133 34 94.1 0 3 401 61 193 XP_026191109.1 40S ribosomal protein S5 [Cyclospora cayetanensis] diamond 25131 198 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
29653810 29653810 PRJEB2333_P_NODE_4590_length_159_cov_0.959016_g3813_i0 PRJEB2333 4590 159 0.959016 1.52483544 Cryptosporidium andersoni 117008 SAR_Eukaryotes SAR_Eukaryotes 70.1 5.32e-13   NR XP_067069864.1 117008 g3813 i0 64.2 2 53 19 100 0 159 1 19 71 XP_067069864.1 60s ribosomal protein L13A [Cryptosporidium andersoni] diamond 318 70.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium andersoni
30759939 30759939 PRJEB2333_P_NODE_2514_length_583_cov_1.600733_g1747_i0 PRJEB2333 2514 583 1.600733 9.33227339 Babesia microti strain RI 1133968 SAR_Eukaryotes SAR_Eukaryotes 118 5.58e-30   NR XP_021338074.1 1133968 g1747 i0 59.1 4.77530017152659 93 38 47.9 0 379 101 52 144 XP_021338074.1 small subunit ribosomal protein S18e [Babesia microti strain RI] diamond 2784 118 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;