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contig_metadata

18 rows where bioproject = "PRJEB2333", tax_kingdom = "Metazoa" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 18 ✖

tax_kingdom 1

  • Metazoa · 18 ✖

tax_clade 1

bioproject 1

  • PRJEB2333 · 18 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
986122 986122 PRJEB2333_P_NODE_2141_length_813_cov_4.243557_g1401_i0 PRJEB2333 2141 813 4.243557 34.50011841 Mus 10088 Chordata Chordata 981 0   NTclustered gi|846387786|dbj|LC061991.1| 10090 g1401 i0 99.813 91.389913899139 534 1 91 0 1 534 553 1086 Mus musculus mitochondrion DNA, including ATP6, COX3, tRNA-Gly, ND3, tRNA-Arg, ND4L, ND4 genes, complete sequence, sequence_id: (8070..10988)_18 blastn 74300 981 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
1297079 1297079 PRJEB2333_P_NODE_4462_length_163_cov_1.857143_g3685_i0 PRJEB2333 4462 163 1.857143 3.02714309 Mus musculus 10090 Chordata Chordata 302 1.22e-77   NTclustered gi|53102|emb|X00496.1| 10090 g3685 i0 100 20.7055214723926 163 0 100 0 1 163 693 531 Mouse Ia-associated invariant chain (Ii) mRNA fragment blastn 3375 302 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
2261421 2261421 PRJEB2333_P_NODE_2302_length_710_cov_2.967311_g1554_i0 PRJEB2333 2302 710 2.967311 21.0679081 Mus 10088 Chordata Chordata 907 0   NTclustered gi|846387676|dbj|LC061971.1| 10090 g1554 i0 100 89.0140845070423 491 0 89 0 1 491 1727 1237 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_20 blastn 63200 907 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
7363892 7363892 PRJEB2333_P_NODE_4586_length_159_cov_1.278689_g3809_i0 PRJEB2333 4586 159 1.278689 2.03311551 Mus 10088 Chordata Chordata 294 1.98e-75   NTclustered gi|1679830624|ref|XM_021150950.2| 10089 g3809 i0 100 99.2138364779874 159 0 100 0 1 159 531 373 PREDICTED: Mus caroli 40S ribosomal protein S11 (LOC110284938), mRNA blastn 15775 294 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus caroli
8639271 8639271 PRJEB2333_P_NODE_4207_length_174_cov_1.138686_g3430_i0 PRJEB2333 4207 174 1.138686 1.98131364 Mus 10088 Chordata Chordata 322 1.01e-83   NTclustered gi|1912481453|gb|MW054196.1| 10090 g3430 i0 100 101.965517241379 174 0 100 0 1 174 389 216 Mus musculus isolate Lead acetate + ZnCl2 large subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 17742 322 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
11189513 11189513 PRJEB2333_P_NODE_4369_length_166_cov_2.108527_g3592_i0 PRJEB2333 4369 166 2.108527 3.50015482 Mus 10088 Chordata Chordata 307 2.69e-79   NTclustered gi|846387457|dbj|LC061936.1| 10090 g3592 i0 100 100 166 0 100 0 1 166 302 137 Mus musculus mitochondrion DNA, including ND2, tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, tRNA-Tyr, COX1 genes, complete sequence, sequence_id: (4078..6548)_6 blastn 16600 307 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
12776457 12776457 PRJEB2333_P_NODE_4591_length_159_cov_0.959016_g3814_i0 PRJEB2333 4591 159 0.959016 1.52483544 Mus musculus 10090 Chordata Chordata 294 1.98e-75   NTclustered gi|74225281|dbj|AK152892.1| 10090 g3814 i0 100 98.0314465408805 159 0 100 0 1 159 501 343 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830089I05 product:cathepsin D, full insert sequence blastn 15587 294 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15014000 15014000 PRJEB2333_P_NODE_2192_length_781_cov_2.037634_g1449_i0 PRJEB2333 2192 781 2.037634 15.91392154 Mus 10088 Chordata Chordata 521 4.969999999999998e-143   NTclustered gi|846387786|dbj|LC061991.1| 10090 g1449 i0 100 79.6709346991037 282 0 80 0 1 282 2516 2235 Mus musculus mitochondrion DNA, including ATP6, COX3, tRNA-Gly, ND3, tRNA-Arg, ND4L, ND4 genes, complete sequence, sequence_id: (8070..10988)_18 blastn 62223 521 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15014013 15014013 PRJEB2333_P_NODE_2692_length_510_cov_1.295983_g1922_i0 PRJEB2333 2692 510 1.295983 6.6095133 Mus 10088 Chordata Chordata 435 4.24e-117   NTclustered gi|756142290|gb|KP260515.1| 10090 g1922 i0 100 85.8549019607843 235 0 86 0 1 235 12507 12273 Mus musculus strain ME mitochondrion, complete genome blastn 43786 435 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15325038 15325038 PRJEB2333_P_NODE_4833_length_152_cov_1.060870_g4056_i0 PRJEB2333 4833 152 1.06087 1.6125224 Canis lupus 9612 Chordata Chordata 265 1.47e-66   NTclustered gi|823758748|gb|KP081776.1| 9615 g4056 i0 98.026 475.703947368421 152 3 100 0 1 152 1253590 1253439 Canis lupus familiaris chromosome Y genomic sequence blastn 72307 265 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
18837929 18837929 PRJEB2333_P_NODE_2195_length_780_cov_2.837147_g1452_i0 PRJEB2333 2195 780 2.837147 22.1297466 Mus 10088 Chordata Chordata 909 0   NTclustered gi|756142290|gb|KP260515.1| 10090 g1452 i0 100 78.5897435897436 492 0 79 0 288 779 11044 11535 Mus musculus strain ME mitochondrion, complete genome blastn 61300 909 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20423575 20423575 PRJEB2333_P_NODE_2717_length_500_cov_4.095032_g1947_i0 PRJEB2333 2717 500 4.095032 20.47516 Mus musculus 10090 Chordata Chordata 409 2.5199999999999997e-109   NTclustered gi|12846704|dbj|AK010927.1| 10090 g1947 i0 100 66.886 221 0 86 0 1 221 515 295 Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2510008C04 product:hemoglobin, beta adult major chain, full insert sequence blastn 33443 409 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21699593 21699593 PRJEB2333_P_NODE_3238_length_412_cov_0.725333_g2463_i0 PRJEB2333 3238 412 0.725333 2.98837196 Carcharodon carcharias 13397 Chordata Chordata 99 5.01e-16   NTclustered gi|2031746297|ref|XM_041177016.1| 13397 g2463 i0 95.161 16.1553398058252 62 3 15 0 19 80 1598 1537 PREDICTED: Carcharodon carcharias dynamin 2a (dnm2a), transcript variant X9, mRNA blastn 6656 99 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Lamniformes Alopiidae Carcharodon Carcharodon carcharias
22663110 22663110 PRJEB2333_P_NODE_3998_length_188_cov_1.033113_g3221_i0 PRJEB2333 3998 188 1.033113 1.94225244 Mus 10088 Chordata Chordata 348 1.84e-91   NTclustered gi|756142290|gb|KP260515.1| 10090 g3221 i0 100 100 188 0 100 0 1 188 13015 12828 Mus musculus strain ME mitochondrion, complete genome blastn 18800 348 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
23938472 23938472 PRJEB2333_P_NODE_2079_length_848_cov_5.123305_g1345_i0 PRJEB2333 2079 848 5.123305 43.4456264 Mus 10088 Chordata Chordata 1543 0   NTclustered gi|3719448|gb|AF093677.1|AF093677 10090 g1345 i0 100 98.1969339622642 835 0 98 0 1 835 835 1 Mus musculus ATPase subunit 6 (Atpase6) mRNA, mitochondrial gene encoding mitochondrial protein, complete cds blastn 83271 1543 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
24248693 24248693 PRJEB2333_P_NODE_4020_length_186_cov_1.570470_g3243_i0 PRJEB2333 4020 186 1.57047 2.9210742 Mus musculus 10090 Chordata Chordata 344 2.34e-90   NTclustered gi|255708424|ref|NM_001164048.1| 10090 g3243 i0 100 100 186 0 100 0 1 186 410 225 Mus musculus myoglobin (Mb), transcript variant 3, mRNA blastn 18600 344 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
25212246 25212246 PRJEB2333_P_NODE_3200_length_417_cov_1.921053_g2425_i0 PRJEB2333 3200 417 1.921053 8.01079101 Mus 10088 Chordata Chordata 771 0   NTclustered gi|846387457|dbj|LC061936.1| 10090 g2425 i0 100 100 417 0 100 0 1 417 299 715 Mus musculus mitochondrion DNA, including ND2, tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, tRNA-Tyr, COX1 genes, complete sequence, sequence_id: (4078..6548)_6 blastn 41700 771 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
25212251 25212251 PRJEB2333_P_NODE_3480_length_304_cov_1.460674_g2703_i0 PRJEB2333 3480 304 1.460674 4.44044896 Mus 10088 Chordata Chordata 556 4.919999999999999e-154   NTclustered gi|756142290|gb|KP260515.1| 10090 g2703 i0 99.671 100 304 1 100 0 1 304 13551 13248 Mus musculus strain ME mitochondrion, complete genome blastn 30400 556 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;