RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB2333", tax_clade = "core chlorophytes" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJEB2333 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
986148 986148 PRJEB2333_P_NODE_3661_length_224_cov_1.614973_g2884_i0 PRJEB2333 3661 224 1.614973 3.61753952 Eukaryota 2759 Plants Plants 414 2.1999999999999996e-111   NTclustered gi|1714003650|gb|MN243923.1| 3079 g2884 i0 100 99.3883928571429 224 0 100 0 1 224 557 780 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 22263 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
7363878 7363878 PRJEB2333_P_NODE_4026_length_186_cov_0.885906_g3249_i0 PRJEB2333 4026 186 0.885906 1.64778516 Chlorellales 35460 Plants Plants 252 1.46e-62   NTclustered gi|723457039|ref|NC_025540.1| 249350 g3249 i0 90.957 157.55376344086 188 15 100 1 1 186 2918 2731 Paradoxia multiseta culture-collection SAG:18.84 chloroplast, complete genome blastn 29305 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Paradoxia Paradoxia multiseta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;