RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB2333", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJEB2333 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7363876 7363876 PRJEB2333_P_NODE_3846_length_199_cov_3.709877_g3069_i0 PRJEB2333 3846 199 3.709877 7.38265523 Leptopharynx 502089 SAR_Eukaryotes SAR_Eukaryotes 363 7.019999999999998e-96   NTclustered gi|2125425273|gb|OK663150.1| 187299 g3069 i0 99.497 96.2763819095477 199 1 100 0 1 199 575 377 Uncultured ciliate isolate DGGE gel band clone C81 small subunit ribosomal RNA gene, partial sequence blastn 19159 363 1 Eukaryota Sar   Ciliophora         uncultured ciliate
20112712 20112712 PRJEB2333_P_NODE_4436_length_164_cov_1.724409_g3659_i0 PRJEB2333 4436 164 1.724409 2.82803076 Leptopharynx 502089 SAR_Eukaryotes SAR_Eukaryotes 298 1.59e-76   NTclustered gi|318083432|gb|HQ668467.1| 502090 g3659 i0 99.39 93.140243902439 164 1 100 0 1 164 1614 1451 Leptopharynx costatus 18S ribosomal RNA gene, partial sequence; macronuclear blastn 15275 298 1 Eukaryota Sar   Ciliophora Nassophorea Microthoracida Microthoracidae Leptopharynx Leptopharynx costatus
25212282 25212282 PRJEB2333_P_NODE_4860_length_151_cov_1.578947_g4083_i0 PRJEB2333 4860 151 1.578947 2.38420997 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 279 5.19e-71   NTclustered gi|111035921|emb|AJ781306.1| 5908 g4083 i0 100 84.9470198675497 151 0 100 0 1 151 465 315 Tetrahymena pyriformis partial 23S rRNA gene, strain CCAP 1630/1W blastn 12827 279 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;