RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB2333", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJEB2333 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23938502 23938502 PRJEB2333_P_NODE_3719_length_215_cov_1.646067_g2942_i0 PRJEB2333 3719 215 1.646067 3.53904405 Dictyostelium 5782 Evosea other_Eukaryota 132 2.37e-26   NTclustered gi|2367630|gb|AF016242.1|AF016242 44689 g2942 i0 78.341 49.3395348837209 217 37 97 6 1 209 392 606 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds blastn 10608 132 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
28170221 28170221 PRJEB2333_P_NODE_4226_length_173_cov_1.147059_g3449_i0 PRJEB2333 4226 173 1.147059 1.98441207 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 65.1 2.37e-11   NR XP_642043.1 352472 g3449 i0 52.8 1.83815028901734 53 25 91.9 0 1 159 28 80 XP_642043.1 S60 ribosomal protein L14 [Dictyostelium discoideum AX4] diamond 318 65.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;