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contig_metadata

16 rows where bioproject = "PRJEB20058" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 16 ✖

tax_kingdom 1

bioproject 1

  • PRJEB20058 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25516539 25516539 PRJEB20058_P_NODE_186265_length_269_cov_2.024038_g183442_i0 PRJEB20058 186265 269 2.024038 5.44466222 Fretibacterium fastidiosum 651822 Bacteria Bacteria 374 4.629999999999998e-99   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g183442 i0 93.6 3.10780669144981 250 16 93 0 19 268 2292329 2292080 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 836 374 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
25789312 25789312 PRJEB20058_P_NODE_204003_length_253_cov_5.703125_g201179_i0 PRJEB20058 204003 253 5.703125 14.42890625 Fretibacterium fastidiosum 651822 Bacteria Bacteria 132 2.87e-26   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g201179 i0 95.181 1.56916996047431 83 4 51 0 77 159 1179088 1179170 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 397 132 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
25924509 25924509 PRJEB20058_P_NODE_180324_length_275_cov_28.584112_g177501_i0 PRJEB20058 180324 275 28.584112 78.606308 Fretibacterium fastidiosum 651822 Bacteria Bacteria 374 4.7499999999999996e-99   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g177501 i0 99.512 23.1272727272727 205 1 75 0 1 205 69966 70170 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 6360 374 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
25929649 25929649 PRJEB20058_P_NODE_70844_length_495_cov_2.002304_g68072_i0 PRJEB20058 70844 495 2.002304 9.9114048 Fretibacterium fastidiosum 651822 Bacteria Bacteria 405 3.22e-108   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g68072 i0 90.323 1.25252525252525 310 28 62 2 10 318 535303 534995 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 620 405 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
25929830 25929830 PRJEB20058_P_NODE_74308_length_482_cov_8.187648_g71531_i0 PRJEB20058 74308 482 8.187648 39.46446336 Fretibacterium fastidiosum 651822 Bacteria Bacteria 815 0   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g71531 i0 99.335 23.4170124481328 451 1 94 2 25 475 2673061 2672613 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 11287 815 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
26060961 26060961 PRJEB20058_P_NODE_191453_length_263_cov_38.900990_g188629_i0 PRJEB20058 191453 263 38.90099 102.3096037 Fretibacterium fastidiosum 651822 Bacteria Bacteria 228 3.719999999999999e-55   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g188629 i0 87.374 123.087452471483 198 25 81 0 65 262 70155 69958 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 32372 228 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
26329440 26329440 PRJEB20058_P_NODE_109231_length_386_cov_28.033846_g106420_i0 PRJEB20058 109231 386 28.033846 108.21064556 Fretibacterium fastidiosum 651822 Bacteria Bacteria 658 0   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g106420 i0 99.18 1.89637305699482 366 2 95 1 1 365 2378481 2378846 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 732 658 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
26469416 26469416 PRJEB20058_P_NODE_19328_length_944_cov_2.778029_g17279_i0 PRJEB20058 19328 944 2.778029 26.22459376 Fretibacterium sp. OH122 2699746 Bacteria Bacteria 320 3.09e-104   NR WP_124889134.1 2491047 g17279 i0 94 1.06779661016949 168 10 53.4 0 513 10 1 168 WP_124889134.1 glycine C-acetyltransferase [Fretibacterium sp. OH1220_COT-178] diamond 1008 320 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp. OH1220_COT-178
26473926 26473926 PRJEB20058_P_NODE_68304_length_504_cov_78.203160_g65534_i0 PRJEB20058 68304 504 78.20316 394.1439264 Fretibacterium fastidiosum 651822 Bacteria Bacteria 824 0   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g65534 i0 99.127 1.81746031746032 458 4 91 0 24 481 2007621 2008078 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 916 824 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
26474845 26474845 PRJEB20058_P_NODE_86520_length_443_cov_2.643979_g83731_i0 PRJEB20058 86520 443 2.643979 11.71282697 Fretibacterium sp. OH122 2699746 Bacteria Bacteria 201 3.16e-60   NR WP_124887202.1 2491047 g83731 i0 87.5 0.758465011286682 112 14 75.8 0 9 344 285 396 WP_124887202.1 cell division protein FtsZ [Fretibacterium sp. OH1220_COT-178] diamond 336 201 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp. OH1220_COT-178
32945253 32945253 PRJEB20058_P_NODE_204258_length_253_cov_2.651042_g201434_i0 PRJEB20058 204258 253 2.651042 6.70713626 Acetomicrobium sp. 1872099 Bacteria Bacteria 114 5.889999999999999e-28   NR MBP8674744.1 1872099 g201434 i0 66.7 1.77865612648221 75 25 88.9 0 24 248 97 171 MBP8674744.1 restriction endonuclease subunit S [Acetomicrobium sp.] diamond 450 114 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium sp.
32979099 32979099 PRJEB20058_P_NODE_117747_length_369_cov_1.733766_g114932_i0 PRJEB20058 117747 369 1.733766 6.39759654 Jonquetella 428711 Bacteria Bacteria 237 2.55e-76   NR WP_008519836.1 428711 g114932 i0 99.2 0.975609756097561 120 1 97.6 0 368 9 27 146 WP_008519836.1 MULTISPECIES: L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha [Jonquetella] diamond 360 237 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Jonquetella  
32980079 32980079 PRJEB20058_P_NODE_75123_length_479_cov_16.937799_g72345_i0 PRJEB20058 75123 479 16.937799 81.13205721 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 262 1.72e-83   NR WP_299075721.1 1678694 g72345 i0 91.7 1.79123173277662 145 12 90.8 0 457 23 186 330 WP_299075721.1 LCP family protein [uncultured Fretibacterium sp.] diamond 858 262 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
33064781 33064781 PRJEB20058_P_NODE_220453_length_242_cov_2.298343_g217628_i0 PRJEB20058 220453 242 2.298343 5.56199006 Synergistaceae bacterium 2053624 Bacteria Bacteria 63.5 1.69e-9   NR NLA90347.1 2053624 g217628 i0 46.8 0.954545454545455 77 24 95.5 2 3 233 111 170 NLA90347.1 preprotein translocase subunit SecY [Synergistaceae bacterium] diamond 231 63.5 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
33116508 33116508 PRJEB20058_P_NODE_97247_length_414_cov_4.535411_g94444_i0 PRJEB20058 97247 414 4.535411 18.77660154 Synergistaceae bacterium 2053624 Bacteria Bacteria 251 1.12e-80   NR MBP8633137.1 2053624 g94444 i0 92.5 0.963768115942029 133 10 96.4 0 6 404 121 253 MBP8633137.1 histidinol-phosphate transaminase [Synergistaceae bacterium] diamond 399 251 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
33132564 33132564 PRJEB20058_P_NODE_131375_length_343_cov_9.109929_g128556_i0 PRJEB20058 131375 343 9.109929 31.24705647 Synergistaceae bacterium 2053624 Bacteria Bacteria 154 1.59e-44   NR MDR1732101.1 2053624 g128556 i0 78.4 0.848396501457726 97 21 84.8 0 18 308 45 141 MDR1732101.1 cobalamin-dependent protein [Synergistaceae bacterium] diamond 291 154 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;