RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where bioproject = "PRJEB20058", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Viruses · 18 ✖

tax_phylum 1

  • Negarnaviricota · 18 ✖

tax_kingdom 1

bioproject 1

  • PRJEB20058 · 18 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22662853 22662853 PRJEB20058_S_NODE_3898_length_326_cov_0.988679_g3860_i0 PRJEB20058 3898 326 0.988679 3.22309354 Alphainfluenzavirus 197911 Viruses Viruses 473 5.519999999999999e-129   NTclustered gi|2905083291|gb|PV081924.1| 11320 g3860 i0 99.237 80.3466257668712 262 2 80 0 1 262 528 789 Influenza A virus (A/MDCK serial passage/San Diego/serial passage/2021(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds blastn 26193 473 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
23938235 23938235 PRJEB20058_S_NODE_1139_length_637_cov_4.244792_g1102_i0 PRJEB20058 1139 637 4.244792 27.03932504 Alphainfluenzavirus 197911 Viruses Viruses 966 0   NTclustered gi|75181074|gb|CY002744.1| 332746 g1102 i0 99.622 82.7378335949765 529 2 83 0 63 591 1220 1748 Influenza A virus (A/Memphis/109/1972(H3N2)) hemagglutinin (HA) gene, complete cds blastn 52704 974 0.991786447638604 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
25515501 25515501 PRJEB20058_P_NODE_162233_length_297_cov_1.961864_g159410_i0 PRJEB20058 162233 297 1.961864 5.82673608 Grapevine associated cogu-like virus 2 2716184 Viruses Viruses 481 2.97e-131   NTclustered gi|2500668871|ref|NC_078437.1| 2716184 g159410 i0 95.946 1.58922558922559 296 12 99 0 2 297 1944 2239 Grapevine associated cogu-like virus 2 isolate DMG 86 segment RNA1 P1 (QK698_sRNA1gp1) gene, complete cds blastn 472 481 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Laulavirus Laulavirus alphaviticulum
25612978 25612978 PRJEB20058_P_NODE_173153_length_283_cov_46.612613_g170330_i0 PRJEB20058 173153 283 46.612613 131.91369479 Alphainfluenzavirus 197911 Viruses Viruses 261 3.99e-65   NTclustered gi|315076809|gb|CY077791.1| 936107 g170330 i0 100 49.5547703180212 141 0 50 0 93 233 142 2 Influenza A virus (A/Bilthoven/1761/1976(H3N2)) polymerase PB2 (PB2) gene, complete cds blastn 14024 261 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
25750337 25750337 PRJEB20058_P_NODE_27066_length_803_cov_3976.037736_g4283_i2 PRJEB20058 27066 803 3976.037736 31927.58302008 Alphainfluenzavirus 197911 Viruses Viruses 1009 0   NTclustered gi|2905083291|gb|PV081924.1| 11320 g4283 i2 100 73.4545454545455 546 0 76 0 122 667 212 757 Influenza A virus (A/MDCK serial passage/San Diego/serial passage/2021(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds blastn 58984 1009 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
25786505 25786505 PRJEB20058_P_NODE_13795_length_1117_cov_3.081439_g12065_i0 PRJEB20058 13795 1117 3.081439 34.41967363 Influenza A virus (A/swine/Hong Kong/127/1982(H3N2)) 384483 Viruses Viruses 71.3 3.14e-7   NTclustered gi|432357|dbj|D21182.1|FLAHAS127 384483 g12065 i0 93.878 4.2094897045658 49 0 4 2 1069 1117 718 673 Influenza A virus (A/swine/Hong Kong/127/1982(H3N2)) gene for hemagglutinin, partial cds blastn 4702 71.3 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
25791099 25791099 PRJEB20058_P_NODE_28147_length_789_cov_11.070055_g25762_i0 PRJEB20058 28147 789 11.070055 87.34273395 Coleopteran phasma-related virus OKIAV235 2746309 Viruses Viruses 1330 0   NTclustered gi|2500668694|ref|NC_078332.1| 2746309 g25762 i0 98.413 0.958174904942966 756 12 96 0 20 775 3125 2370 Coleopteran phasma-related virus OKIAV235 segment L genomic sequence blastn 756 1330 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Phasmaviridae Orthophasmavirus Orthophasmavirus sp. 'coleopterus'
25791273 25791273 PRJEB20058_P_NODE_31131_length_752_cov_2.308249_g28639_i0 PRJEB20058 31131 752 2.308249 17.35803248 Sonemauk virus 3131582 Viruses Viruses 144 2.98e-35   NR WZH61623.1 3131582 g28639 i0 38.5 1.78723404255319 221 126 85.4 5 69 710 1069 1286 WZH61623.1 MAG: RNA-dependent RNA polymerase [Sonemauk virus] diamond 1344 144 1 Viruses   Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales     Sonemauk virus
26021673 26021673 PRJEB20058_P_NODE_196444_length_259_cov_1.161616_g193620_i0 PRJEB20058 196444 259 1.161616 3.00858544 Alphainfluenzavirus 197911 Viruses Viruses 479 9.13e-131   NTclustered gi|13274643|gb|AF258842.1| 153970 g193620 i0 100 100 259 0 100 0 1 259 1203 1461 Influenza A virus (A/Hong Kong/498/97(H3N2)) RNA polymerase (PB2) gene, complete cds blastn 25900 479 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
26022983 26022983 PRJEB20058_P_NODE_5196_length_1935_cov_2640.768943_g4283_i1 PRJEB20058 5196 1935 2640.768943 51098.87904705 root 1 Root_unresolved Root_unresolved 1838 0   NTclustered gi|2905083291|gb|PV081924.1| 11320 g4283 i1 99.9 83.4547803617571 998 1 83 0 122 1119 212 1209 Influenza A virus (A/MDCK serial passage/San Diego/serial passage/2021(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds blastn 161485 1838 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
26156430 26156430 PRJEB20058_P_NODE_108053_length_389_cov_4.179878_g105242_i0 PRJEB20058 108053 389 4.179878 16.25972542 Alphainfluenzavirus 197911 Viruses Viruses 520 8.479999999999999e-143   NTclustered gi|2905074022|gb|PV081923.1| 11320 g105242 i0 98.635 75.2159383033419 293 4 75 0 49 341 414 122 Influenza A virus (A/MDCK serial passage/San Diego/Serial passage/2021(H3N2)) segment 6 neuraminidase (NA) gene, complete cds blastn 29259 520 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
26157714 26157714 PRJEB20058_P_NODE_188965_length_266_cov_3.273171_g186141_i0 PRJEB20058 188965 266 3.273171 8.70663486 Negarnaviricota 2497569 Viruses Viruses 433 7.44e-117   NTclustered gi|2500668869|ref|NC_078436.1| 2716184 g186141 i0 97.992 1.85714285714286 249 5 94 0 1 249 250 2 Grapevine associated cogu-like virus 2 isolate DMG 86 segment RNA3 P3 (QK698_sRNA3gp1) gene, complete cds blastn 494 433 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Hareavirales Phenuiviridae Laulavirus Laulavirus alphaviticulum
26430855 26430855 PRJEB20058_P_NODE_5191_length_1936_cov_2698.298133_g4283_i0 PRJEB20058 5191 1936 2698.298133 52239.05185488 root 1 Root_unresolved Root_unresolved 1838 0   NTclustered gi|2905083291|gb|PV081924.1| 11320 g4283 i0 99.9 83.4101239669422 998 1 83 0 122 1119 212 1209 Influenza A virus (A/MDCK serial passage/San Diego/serial passage/2021(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds blastn 161482 1838 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
26475444 26475444 PRJEB20058_P_NODE_9888_length_1326_cov_6.308300_g8450_i0 PRJEB20058 9888 1326 6.3083 83.648058 Influenza A virus (A/Victoria/3/1975(H3N2)) 392809 Viruses Viruses 2401 0   NTclustered gi|383276899|gb|CY113186.1| 392809 g8450 i0 100 98.0392156862745 1300 0 98 0 1 1300 1962 663 Influenza A virus (A/Victoria/3/1975(H3N2)) polymerase PA (PA) gene, complete cds blastn 130000 2401 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
32928044 32928044 PRJEB20058_P_NODE_19417_length_942_cov_2.770715_g17366_i0 PRJEB20058 19417 942 2.770715 26.1001353 Plasmopara viticola lesion associated mycobunyavirales-like virus 1 2689124 Viruses Viruses 147 1.7199999999999998e-35   NR QGY72638.1 2689124 g17366 i0 34.3 0.993630573248408 312 185 93.6 8 2 883 615 924 QGY72638.1 RNA dependent RNA polymerase [Plasmopara viticola lesion associated mycobunyavirales-like virus 1] diamond 936 147 1 Viruses   Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales     Plasmopara viticola lesion associated mycobunyavirales-like virus 1
32962904 32962904 PRJEB20058_P_NODE_54810_length_567_cov_27.339921_g52065_i0 PRJEB20058 54810 567 27.339921 155.01735207 Rhizoctonia cerealis bunyavirus 3068840 Viruses Viruses 56.6 6.96e-6   NR WMI40170.1 3068840 g52065 i0 26.3 0.804232804232804 152 105 79.9 2 45 497 84 229 WMI40170.1 MAG: hypothetical protein [Rhizoctonia cerealis bunyavirus] diamond 456 56.6 1 Viruses   Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales     Rhizoctonia cerealis bunyavirus
33013644 33013644 PRJEB20058_P_NODE_229780_length_232_cov_3.491228_g226955_i0 PRJEB20058 229780 232 3.491228 8.09964896 Sonemauk virus 3131582 Viruses Viruses 75.9 7.14e-14   NR WZH61623.1 3131582 g226955 i0 50.6 0.995689655172414 77 38 99.6 0 231 1 1150 1226 WZH61623.1 MAG: RNA-dependent RNA polymerase [Sonemauk virus] diamond 231 75.9 1 Viruses   Orthornavirae Negarnaviricota Ellioviricetes Bunyavirales     Sonemauk virus
33030920 33030920 PRJEB20058_P_NODE_30508_length_759_cov_30.325215_g28033_i0 PRJEB20058 30508 759 30.325215 230.16838185 African cichlid piscichuvirus 3065075 Viruses Viruses 125 1.47e-28   NR WLN26256.1 3065075 g28033 i0 44.1 0.573122529644269 145 81 57.3 0 736 302 90 234 WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] diamond 435 125 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;