RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

31 rows where bioproject = "PRJEB20058" and tax_phylum = "Chlorobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJEB20058 · 31 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25516646 25516646 PRJEB20058_P_NODE_18889_length_954_cov_3.460246_g16857_i0 PRJEB20058 18889 954 3.460246 33.01074684 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 369 1.99e-122   NR KXB97602.1 1662223 g16857 i0 97 0.622641509433962 198 6 62.3 0 947 354 256 453 KXB97602.1 MAG: ATP-dependent protease [Chlorobi bacterium NICIL-2] diamond 594 369 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
25519801 25519801 PRJEB20058_P_NODE_38785_length_676_cov_2.242276_g36156_i0 PRJEB20058 38785 676 2.242276 15.15778576 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 228 1.85e-73   NR KXB98053.1 1662223 g36156 i0 99.1 0.519230769230769 117 1 51.9 0 432 82 6 122 KXB98053.1 MAG: 50S ribosomal protein L19 [Chlorobi bacterium NICIL-2] diamond 351 228 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
32928347 32928347 PRJEB20058_P_NODE_25561_length_826_cov_2.252288_g23293_i0 PRJEB20058 25561 826 2.252288 18.60389888 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 514 8.229999999999999e-164   NR KXB97130.1 1662223 g23293 i0 97.8 0.991525423728814 273 6 99.2 0 819 1 643 915 KXB97130.1 MAG: hypothetical protein AA908_08205 [Chlorobi bacterium NICIL-2] diamond 819 514 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
32945559 32945559 PRJEB20058_P_NODE_41082_length_656_cov_8.478992_g38436_i0 PRJEB20058 41082 656 8.478992 55.62218752 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 398 2.8699999999999998e-126   NR KXB97295.1 1662223 g38436 i0 97.1 0.960365853658537 210 6 96 0 652 23 715 924 KXB97295.1 MAG: hypothetical protein AA908_07335 [Chlorobi bacterium NICIL-2] diamond 630 398 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
32963071 32963071 PRJEB20058_P_NODE_84498_length_449_cov_2.201031_g81709_i0 PRJEB20058 84498 449 2.201031 9.88262919 Chlorobiota bacterium 2268192 Bacteria Bacteria 223 3.2599999999999996e-72   NR RMF33086.1 2268192 g81709 i0 98.1 0.694877505567929 104 2 69.5 0 1 312 56 159 RMF33086.1 MAG: NADH-quinone oxidoreductase subunit NuoE [Chlorobiota bacterium] diamond 312 223 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
32974350 32974350 PRJEB20058_P_NODE_209986_length_249_cov_2.569149_g207162_i0 PRJEB20058 209986 249 2.569149 6.39718101 Pseudomonadati 3379134 Bacteria Bacteria 172 7.2e-52   NR MCX8051310.1 2268192 g207162 i0 97.6 2.96385542168675 82 2 98.8 0 247 2 152 233 MCX8051310.1 hypothetical protein [Chlorobiota bacterium] diamond 738 172 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
32996210 32996210 PRJEB20058_P_NODE_165587_length_293_cov_1.491379_g162764_i0 PRJEB20058 165587 293 1.491379 4.36974047 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 107 1.3399999999999999e-24   NR KXB97130.1 1662223 g162764 i0 91.4 0.593856655290102 58 5 59.4 0 292 119 908 965 KXB97130.1 MAG: hypothetical protein AA908_08205 [Chlorobi bacterium NICIL-2] diamond 174 107 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33013089 33013089 PRJEB20058_P_NODE_127092_length_351_cov_2.410345_g124273_i0 PRJEB20058 127092 351 2.410345 8.46031095 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 170 7.94e-49   NR KXB98618.1 1662223 g124273 i0 96.6 0.760683760683761 89 3 76.1 0 269 3 233 321 KXB98618.1 MAG: hypothetical protein AA908_04365 [Chlorobi bacterium NICIL-2] diamond 267 170 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33013625 33013625 PRJEB20058_P_NODE_22548_length_876_cov_22.712883_g20379_i0 PRJEB20058 22548 876 22.712883 198.96485508 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 394 1.4999999999999995e-134   NR KXB97375.1 1662223 g20379 i0 98.9 0.636986301369863 186 2 63.7 0 814 257 162 347 KXB97375.1 MAG: hypothetical protein AA908_06845 [Chlorobi bacterium NICIL-2] diamond 558 394 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33014081 33014081 PRJEB20058_P_NODE_85396_length_446_cov_4.184416_g82607_i0 PRJEB20058 85396 446 4.184416 18.66249536 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 152 1.13e-42   NR KXB97608.1 1662223 g82607 i0 89.5 0.57847533632287 86 9 57.8 0 441 184 49 134 KXB97608.1 MAG: hypothetical protein AA908_05640 [Chlorobi bacterium NICIL-2] diamond 258 152 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33014127 33014127 PRJEB20058_P_NODE_9212_length_1379_cov_4.018968_g7845_i0 PRJEB20058 9212 1379 4.018968 55.42156872 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 612 5.159999999999998e-216   NR KXB97842.1 1662223 g7845 i0 98.3 0.641769398114576 295 5 64.2 0 163 1047 148 442 KXB97842.1 MAG: hypothetical protein AA908_04860 [Chlorobi bacterium NICIL-2] diamond 885 612 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33030195 33030195 PRJEB20058_P_NODE_126500_length_352_cov_2.824742_g123681_i0 PRJEB20058 126500 352 2.824742 9.94309184 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 134 4.84e-37   NR KXB97727.1 1662223 g123681 i0 100 0.571022727272727 67 0 57.1 0 350 150 129 195 KXB97727.1 MAG: hypothetical protein AA908_04785 [Chlorobi bacterium NICIL-2] diamond 201 134 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33030728 33030728 PRJEB20058_P_NODE_214292_length_246_cov_4.183784_g211468_i0 PRJEB20058 214292 246 4.183784 10.29210864 Chlorobiota bacterium 2268192 Bacteria Bacteria 137 6.72e-36   NR RMF35224.1 2268192 g211468 i0 89.6 0.939024390243902 77 8 93.9 0 6 236 76 152 RMF35224.1 MAG: ABC transporter ATP-binding protein [Chlorobiota bacterium] diamond 231 137 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
33030956 33030956 PRJEB20058_P_NODE_36700_length_694_cov_2.969984_g34103_i0 PRJEB20058 36700 694 2.969984 20.61168896 Chlorobiota bacterium 2268192 Bacteria Bacteria 283 7.56e-90   NR MBK8911465.1 2268192 g34103 i0 98.5 0.592219020172911 137 2 59.2 0 677 267 338 474 MBK8911465.1 hypothetical protein [Chlorobiota bacterium] diamond 411 283 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
33042377 33042377 PRJEB20058_P_NODE_121996_length_361_cov_1.273333_g119179_i0 PRJEB20058 121996 361 1.273333 4.59673213 Pseudomonadati 3379134 Bacteria Bacteria 69.3 3.78e-12   NR RMF35410.1 2268192 g119179 i0 90.5 1.19667590027701 42 4 34.9 0 314 189 100 141 RMF35410.1 MAG: hypothetical protein D6747_02650 [Chlorobiota bacterium] diamond 432 69.3 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
33047366 33047366 PRJEB20058_P_NODE_164053_length_295_cov_0.961538_g161230_i0 PRJEB20058 164053 295 0.961538 2.8365371 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 195 2.33e-61   NR KXB97727.1 1662223 g161230 i0 98.9 0.955932203389831 94 1 95.6 0 284 3 9 102 KXB97727.1 MAG: hypothetical protein AA908_04785 [Chlorobi bacterium NICIL-2] diamond 282 195 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33047676 33047676 PRJEB20058_P_NODE_216045_length_245_cov_2.086957_g213221_i0 PRJEB20058 216045 245 2.086957 5.11304465 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 158 3.0299999999999997e-45   NR KXB97147.1 1662223 g213221 i0 88.9 0.991836734693878 81 9 99.2 0 1 243 29 109 KXB97147.1 MAG: hypothetical protein AA908_08305 [Chlorobi bacterium NICIL-2] diamond 243 158 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33047963 33047963 PRJEB20058_P_NODE_49821_length_595_cov_10.110487_g47097_i0 PRJEB20058 49821 595 10.110487 60.15739765 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 277 1.01e-92   NR KXB98236.1 1662223 g47097 i0 99.3 0.741176470588235 147 1 74.1 0 511 71 1 147 KXB98236.1 MAG: hypothetical protein AA908_02240 [Chlorobi bacterium NICIL-2] diamond 441 277 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33065035 33065035 PRJEB20058_P_NODE_46013_length_620_cov_6.733453_g43317_i0 PRJEB20058 46013 620 6.733453 41.7474086 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 128 2.7699999999999997e-30   NR KXB98712.1 1662223 g43317 i0 95.4 0.314516129032258 65 3 31.5 0 610 416 1148 1212 KXB98712.1 MAG: alpha-ketoglutarate decarboxylase [Chlorobi bacterium NICIL-2] diamond 195 128 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33081850 33081850 PRJEB20058_P_NODE_220742_length_242_cov_1.447514_g217917_i0 PRJEB20058 220742 242 1.447514 3.50298388 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 107 8.18e-27   NR KXB98211.1 1662223 g217917 i0 87.7 0.706611570247934 57 7 70.7 0 68 238 1 57 KXB98211.1 MAG: ribulose phosphate epimerase [Chlorobi bacterium NICIL-2] diamond 171 107 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33098300 33098300 PRJEB20058_P_NODE_116990_length_370_cov_5.333333_g114175_i0 PRJEB20058 116990 370 5.333333 19.7333321 Chloroherpetonaceae bacterium 2969135 Bacteria Bacteria 110 3.96e-25   NR MEN6510731.1 2969135 g114175 i0 61.3 3.04054054054054 75 29 60.8 0 13 237 683 757 MEN6510731.1 T9SS type A sorting domain-containing protein [Chloroherpetonaceae bacterium] diamond 1125 110 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae   Chloroherpetonaceae bacterium
33098813 33098813 PRJEB20058_P_NODE_203198_length_254_cov_1.326425_g200374_i0 PRJEB20058 203198 254 1.326425 3.3691195 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 158 8.619999999999999e-43   NR KXB97445.1 1662223 g200374 i0 91.4 2.87007874015748 81 7 95.7 0 253 11 682 762 KXB97445.1 MAG: hypothetical protein AA908_06190 [Chlorobi bacterium NICIL-2] diamond 729 158 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33098846 33098846 PRJEB20058_P_NODE_208550_length_250_cov_2.576720_g205726_i0 PRJEB20058 208550 250 2.57672 6.4418 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 141 1.59e-38   NR KXB98388.1 1662223 g205726 i0 88.6 0.948 79 9 94.8 0 3 239 161 239 KXB98388.1 MAG: tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobi bacterium NICIL-2] diamond 237 141 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33127816 33127816 PRJEB20058_P_NODE_242559_length_210_cov_4.087248_g239734_i0 PRJEB20058 242559 210 4.087248 8.5832208 Pseudomonadati 3379134 Bacteria Bacteria 120 1.82e-30   NR KXB98114.1 1662223 g239734 i0 98.3 2.57142857142857 60 1 85.7 0 8 187 264 323 KXB98114.1 MAG: hypothetical protein AA908_01545 [Chlorobi bacterium NICIL-2] diamond 540 120 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33132403 33132403 PRJEB20058_P_NODE_107031_length_391_cov_10.093939_g104222_i0 PRJEB20058 107031 391 10.093939 39.46730149 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 177 3.1699999999999993e-52   NR KXB97751.1 1662223 g104222 i0 95.7 0.721227621483376 94 4 72.1 0 300 19 1 94 KXB97751.1 MAG: hypothetical protein AA908_04930 [Chlorobi bacterium NICIL-2] diamond 282 177 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33133431 33133431 PRJEB20058_P_NODE_57191_length_555_cov_1.518219_g54439_i0 PRJEB20058 57191 555 1.518219 8.42611545 Chlorobium phaeovibrioides 1094 Bacteria Bacteria 81.6 1.53e-14   NR MDT9547642.1 1094 g54439 i0 32.8 0.956756756756757 177 107 93.5 5 544 26 35 203 MDT9547642.1 protein rep [Chlorobium phaeovibrioides] diamond 531 81.6 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides
33133458 33133458 PRJEB20058_P_NODE_62111_length_531_cov_5.936170_g59349_i0 PRJEB20058 62111 531 5.93617 31.5210627 Chlorobiota bacterium 2268192 Bacteria Bacteria 221 7.670000000000001e-64   NR RMF36389.1 2268192 g59349 i0 91.1 0.700564971751412 124 11 70.1 0 148 519 377 500 RMF36389.1 MAG: alanine--tRNA ligase [Chlorobiota bacterium] diamond 372 221 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
33144855 33144855 PRJEB20058_P_NODE_189383_length_266_cov_1.248780_g186559_i0 PRJEB20058 189383 266 1.24878 3.3217548 Pseudomonadati 3379134 Bacteria Bacteria 160 2.2199999999999996e-47   NR KXK55018.1 1619898 g186559 i0 100 1.78195488721805 79 0 89.1 0 265 29 84 162 KXK55018.1 MAG: hypothetical protein UZ07_CHB004002361 [Chlorobi bacterium OLB7] diamond 474 160 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium OLB7
33149757 33149757 PRJEB20058_P_NODE_166480_length_292_cov_1.108225_g163657_i0 PRJEB20058 166480 292 1.108225 3.236017 Chloroherpetonaceae bacterium 2969135 Bacteria Bacteria 77.8 3.33e-14   NR MEN6510218.1 2969135 g163657 i0 53.1 4.99315068493151 81 38 83.2 0 247 5 1130 1210 MEN6510218.1 S8 family serine peptidase [Chloroherpetonaceae bacterium] diamond 1458 77.8 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae   Chloroherpetonaceae bacterium
33150254 33150254 PRJEB20058_P_NODE_33680_length_723_cov_5.910876_g31121_i0 PRJEB20058 33680 723 5.910876 42.73563348 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 241 4.74e-69   NR KXB97540.1 1662223 g31121 i0 87.9 2.47302904564315 149 18 61.8 0 449 3 1421 1569 KXB97540.1 MAG: hypothetical protein AA908_06695 [Chlorobi bacterium NICIL-2] diamond 1788 241 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
33167264 33167264 PRJEB20058_P_NODE_34240_length_718_cov_2.071537_g31673_i0 PRJEB20058 34240 718 2.071537 14.87363566 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 470 1.8799999999999998e-153   NR KXB98158.1 1662223 g31673 i0 97.9 0.998607242339833 239 5 99.9 0 1 717 187 425 KXB98158.1 MAG: hypothetical protein AA908_01795 [Chlorobi bacterium NICIL-2] diamond 717 470 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;