RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB20058" and tax_phylum = "Atribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Atribacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJEB20058 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25653879 25653879 PRJEB20058_P_NODE_221586_length_241_cov_7.822222_g218761_i0 PRJEB20058 221586 241 7.822222 18.85155502 Atribacter laminatus 2847778 Bacteria Bacteria 219 2.02e-52   NTclustered gi|1940086973|gb|CP065383.1| 2847778 g218761 i0 84.862 0.904564315352697 218 31 90 2 25 241 2445336 2445552 Atribacter laminatus strain RT761 chromosome, complete genome blastn 218 219 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Atribacteraceae Atribacter Atribacter laminatus
25922620 25922620 PRJEB20058_P_NODE_136092_length_335_cov_3.864964_g133272_i0 PRJEB20058 136092 335 3.864964 12.9476294 Atribacter laminatus 2847778 Bacteria Bacteria 307 6.11e-79   NTclustered gi|1940086973|gb|CP065383.1| 2847778 g133272 i0 86.395 6.06865671641791 294 24 87 9 7 298 2421831 2422110 Atribacter laminatus strain RT761 chromosome, complete genome blastn 2033 307 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Atribacteraceae Atribacter Atribacter laminatus
25928780 25928780 PRJEB20058_P_NODE_54460_length_569_cov_24.990157_g51716_i0 PRJEB20058 54460 569 24.990157 142.19399333 uncultured Atribacterota bacterium 263865 Bacteria Bacteria 252 5.16e-62   NTclustered gi|306490911|gb|GU180083.1| 263865 g51716 i0 84.47 305.862917398946 264 31 46 9 43 301 12485 12227 Uncultured candidate division JS1 bacterium clone fosmid vNS2B_16C12 genomic sequence blastn 174036 252 1 Bacteria   Pseudomonadati Atribacterota         uncultured Atribacterota bacterium
26329819 26329819 PRJEB20058_P_NODE_117119_length_370_cov_2.433657_g114304_i0 PRJEB20058 117119 370 2.433657 9.0045309 Atribacter laminatus 2847778 Bacteria Bacteria 499 1.04e-136   NTclustered gi|1940086973|gb|CP065383.1| 2847778 g114304 i0 92.529 0.940540540540541 348 26 94 0 18 365 336682 336335 Atribacter laminatus strain RT761 chromosome, complete genome blastn 348 499 1 Bacteria   Pseudomonadati Atribacterota Atribacteria Atribacterales Atribacteraceae Atribacter Atribacter laminatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;