RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJEB20058", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJEB20058 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25650895 25650895 PRJEB20058_P_NODE_149962_length_313_cov_361.023810_g147140_i0 PRJEB20058 149962 313 361.02381 1130.0045253 Physoderma maydis 276838 Fungi Fungi 252 2.69e-62   NTclustered gi|311235628|ref|NG_027645.1| 276838 g147140 i0 86.134 88.8753993610224 238 27 89 5 73 306 1871 2106 Physoderma maydis DUKE DUH0007932 28S rRNA gene, partial sequence; from reference material blastn 27818 252 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Physoderma Physoderma maydis
33014051 33014051 PRJEB20058_P_NODE_79900_length_463_cov_11.019900_g77118_i0 PRJEB20058 79900 463 11.0199 51.022137 Blastocladiella britannica 64508 Fungi Fungi 154 3.839999999999999e-40   NR KAI9218498.1 64508 g77118 i0 62.1 4.21814254859611 103 39 66.7 0 57 365 490 592 KAI9218498.1 kinase-like domain-containing protein [Blastocladiella britannica] diamond 1953 154 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
33025599 33025599 PRJEB20058_P_NODE_34196_length_718_cov_9.945205_g31630_i0 PRJEB20058 34196 718 9.945205 71.4065719 Allomyces 28581 Fungi Fungi 171 9.55e-47   NR KAJ3357772.1 64505 g31630 i0 64.6 1.42479108635097 113 40 47.2 0 339 677 335 447 KAJ3357772.1 hypothetical protein GGF32_000854 [Allomyces javanicus] diamond 1023 171 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus
33065122 33065122 PRJEB20058_P_NODE_63389_length_525_cov_35.394397_g60627_i0 PRJEB20058 63389 525 35.394397 185.82058425 Paraphysoderma sedebokerense 1500003 Fungi Fungi 79 1.7e-13   NR KAI9137640.1 1500003 g60627 i0 55.4 1.46857142857143 65 27 36 1 212 24 40 104 KAI9137640.1 kinase-like domain-containing protein [Paraphysoderma sedebokerense] diamond 771 79 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;