RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJEB20058", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJEB20058 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32922804 32922804 PRJEB20058_P_NODE_17433_length_990_cov_221.324004_g15470_i0 PRJEB20058 17433 990 221.324004 2191.1076396 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87.8 1.14e-16   NR CEO99344.1 37360 g15470 i0 34.3 5.76060606060606 143 88 43 2 874 449 26 163 CEO99344.1 hypothetical protein PBRA_001250, partial [Plasmodiophora brassicae] diamond 5703 87.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
33047990 33047990 PRJEB20058_P_NODE_53925_length_572_cov_21.050881_g51184_i0 PRJEB20058 53925 572 21.050881 120.41103932 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 82.8 2.03e-15   NR CEO95401.1 37360 g51184 i0 75.5 0.566433566433566 53 13 27.8 0 547 389 20 72 CEO95401.1 hypothetical protein PBRA_009668 [Plasmodiophora brassicae] diamond 324 82.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;