RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJEB20058", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJEB20058 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6400850 6400850 PRJEB20058_S_NODE_3646_length_340_cov_36.960573_g3608_i0 PRJEB20058 3646 340 36.960573 125.6659482 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 577 4.2899999999999987e-160   NTclustered gi|2319581824|ref|XM_001305249.2| 412133 g3608 i0 99.683 92.5117647058824 315 1 93 0 24 338 88 402 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_0982340), partial mRNA blastn 31454 577 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
25514834 25514834 PRJEB20058_P_NODE_146809_length_318_cov_6.501946_g143988_i0 PRJEB20058 146809 318 6.501946 20.67618828 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.008   NTclustered gi|2806460920|ref|XM_068504445.1| 1144522 g143988 i0 100 0.0911949685534591 29 0 9 0 66 94 3263 3235 Tritrichomonas foetus uncharacterized protein (TRFO_25571), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
25516145 25516145 PRJEB20058_P_NODE_176545_length_280_cov_1.369863_g173722_i0 PRJEB20058 176545 280 1.369863 3.8356164 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.026   NTclustered gi|2806447720|ref|XM_068491342.1| 1144522 g173722 i0 100 0.1 28 0 10 0 30 57 317 344 Tritrichomonas foetus uncharacterized protein (TRFO_03512), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;